Factsheet for TraesCS2A01G493700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16481623
plastid: 16595579
plastid: 18419817
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G246000.3
TraesCS5B01G243400.1
TraesCS5D01G252600.2
TraesCS7A01G282200.4
TraesCS7B01G179000.2
TraesCS7D01G280800.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	TraesCS5A01G246000.3	AT4G24560.1	23232097
AT4G13930.1	TraesCS5B01G243400.1	AT4G24560.1	23232097
AT4G13930.1	TraesCS5D01G252600.2	AT4G24560.1	23232097
AT4G13930.1	TraesCS7A01G282200.4	AT4G24560.1	23232097
AT4G13930.1	TraesCS7B01G179000.2	AT4G24560.1	23232097
AT4G13930.1	TraesCS7D01G280800.4	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G493600.1	Wheat	cytosol	100.0	100.0
TraesCS2B01G521700.1	Wheat	cytosol	99.79	99.79
Os11t0455800-01	Rice	plasma membrane	95.12	95.12
EES08452	Sorghum	cytosol	91.93	91.93
Zm00001d040457_P001	Maize	mitochondrion	18.9	91.75
GSMUA_Achr8P00310_001	Banana	cytosol	47.13	88.1
GSMUA_Achr6P06520_001	Banana	cytosol	82.17	86.97
GSMUA_Achr9P01620_001	Banana	cytosol	79.83	85.84
VIT_05s0029g00310.t01	Wine grape	cytosol	85.35	85.35
GSMUA_Achr9P07310_001	Banana	cytosol	73.04	84.94
CDY69223	Canola	cytosol	84.93	84.93
Bra032749.1-P	Field mustard	cytosol	84.93	84.93
Solyc05g053810.2.1	Tomato	nucleus, plastid	84.93	84.93
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	99.15	84.75
PGSC0003DMT400040717	Potato	cytosol	84.5	84.5
CDY50421	Canola	cytosol	77.71	84.33
CDY01173	Canola	cytosol	77.71	84.33
AT4G13930.1	Thale cress	cytosol	84.29	84.29
CDY47310	Canola	cytosol	77.49	84.1
Bra014001.1-P	Field mustard	cytosol	77.49	84.1
PGSC0003DMT400011868	Potato	cytosol	84.08	84.08
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	83.44	83.44
Zm00001d049234_P001	Maize	plastid	92.99	83.27
KRH58850	Soybean	cytosol	81.95	80.58
AT4G13890.1	Thale cress	cytosol	75.37	75.53
TraesCS1A01G218700.1	Wheat	golgi	84.08	74.02
KRH42751	Soybean	endoplasmic reticulum, nucleus	84.29	69.41
TraesCS4A01G246100.1	Wheat	mitochondrion	57.32	52.94
TraesCS3A01G385600.1	Wheat	cytosol	62.84	50.6

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:TraesCS2A01G493700
EnsemblPlants:TraesCS2A01G493700.1	TIGR:cd00378	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:+:726022780..726026255

Molecular Weight (calculated)

51459.6 Da

IEP (calculated)

7.272

GRAVY (calculated)

-0.206

Length

471 amino acids

Sequence
(BLAST)

001: MDSVASWGLT PLADADPDVF DLIEREKRRQ RSGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGARYYG GNDVIDEIEN LCRDRALAAF RLDAASWGVN
101: VQPYSGSPAN FAAYTALLNP HDRIMGLDLP SGGHLTHGYY TAGGKKISAT SIYFESLPYK VSAANGYIDY DKLEEKAMDF RPKLIICGGS AYPRDWDYAR
201: LRAVADKVGA MLLCDMAHIS GLVAAQEAAN PFEFCDVVTT TTHKSLRGPR AGMIFYRKGP KPAKKGQPEG AVYDYEDKIN FAVFPSLQGG PHNHQIAALA
301: VALKQTLTPG FKAYAKQVKA NAVAVGKYLM SKGYKMVTDG TDNHLVLWDL RPLGLTGNKV EKMCDLCSIT LNKNAVFGDS SALSPGGVRI GAPAMTSRGL
401: VEKDFEQIAE FLHQAVTICL NIQKEHGKLL KDFSKGLVNN KDIENLKVEV EKFALSFDMP GFSLESMKYK E

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.