Factsheet for Os12t0409000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055860.2	Barley	plasma membrane	80.04	90.23
TraesCS1B01G232200.2	Wheat	plastid	85.88	85.55
TraesCS1D01G220400.1	Wheat	golgi	85.69	85.37
TraesCS1A01G218700.1	Wheat	golgi	85.69	85.05
Os11t0455800-01	Rice	plasma membrane	75.33	84.93
EES16245	Sorghum	plastid	85.31	82.97
Zm00001d030859_P001	Maize	plastid	83.05	70.11
Os03t0738400-01	Rice	mitochondrion	51.98	53.8
Os05t0429000-01	Rice	cytosol	57.25	51.79
Os01t0874900-01	Rice	extracellular	57.44	50.83

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EntrezGene:4352058	ProteinID:ABA97575.2	EMBL:AK101088
ProteinID:BAT16854.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00051	EnsemblPlantsGene:Os12g0409000	EnsemblPlants:Os12t0409000-01	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q2QT32
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0000D89D3D	RefSeq:XP_015620540.1	SEG:seg

Description

serine hydroxymethyltransferase 3Similar to Serine hydroxymethyltransferase. (Os12t0409000-01)

Coordinates

chr12:-:12392759..12396626

Molecular Weight (calculated)

58210.4 Da

IEP (calculated)

7.091

GRAVY (calculated)

-0.303

Length

531 amino acids

Sequence
(BLAST)

001: MAMASHHLAQ PPTRAALSSR PTYPLSSHHH SSRLQLPLVS GARRSRLSPA VATSPVAAPA MDAVADWGLT TLEEADPEVY DLVEREKRRQ RAGVELIASE
101: NFTSLAVMEA LGSPLTNKYS EGMPGSRYYG GNEVIDEVEE LCRARALAAF HLDPEAWGVN VQPYSGSPAN FAAYTGLLQP HERIMGLDLP SGGHLTHGYY
201: TAGGKKISAT SIYFESLPYK VSSETGYVDY DKLEEKAMDF RPKLIICGGS AYPRDWDYAR FRAIADKCGA MLLCDMAHIS GLVAAQEAAN PFQYSDVVTT
301: TTHKSLRGPR SGMIFYRKGL KPPKKGQPEG ALYDYEDRIN FAVFPSLQGG PHNHQIAALA VGLKQTMSPG FKSYIKQVKA NAVALGNHLM SKGYKLVTDG
401: TENHLVLWDL RPLGLTGNKV EKVCDLCSIT LNKNAVFGDS SAMSPGGVRI GTPAMTSRGL VEEDFVQIAE FLHQAVTICL DVQKERGKLL KYFNEGLENN
501: KDIEDLRAEV EKFATSFEMP GFRVSDMKYK D

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.