CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07754
KRH11116
KRH11117
KRH21130
KRH23549
KRH26204
KRH44417
KRH47491

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	KRH23549	AT3G15660.1	21798944
AT4G32520.1	KRH44417	AT3G15660.1	21798944
AT4G32520.1	KRH47491	AT3G15660.1	21798944
AT4G32520.1	KRH07754	AT4G32520.1	21798944
AT4G32520.1	KRH11116	AT4G32520.1	21798944
AT4G32520.1	KRH11117	AT4G32520.1	21798944
AT4G32520.1	KRH21130	AT4G32520.1	21798944
AT4G32520.1	KRH26204	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07754	Soybean	cytosol, nucleus, peroxisome	64.32	67.59
PGSC0003DMT400002684	Potato	plastid	61.23	65.88
KRH26204	Soybean	cytosol	52.86	60.3
KRH21130	Soybean	plastid	94.71	40.11
Solyc12g095930.1.1	Tomato	plastid	73.13	31.5
Solyc08g065490.2.1	Tomato	nucleus, plastid	72.69	31.49
VIT_04s0008g00770.t01	Wine grape	plastid	73.13	31.44
AT4G32520.1	Thale cress	plastid	69.6	29.87
Bra040080.1-P	Field mustard	plastid	65.2	27.98
CDY39889	Canola	plastid	65.64	25.69
GSMUA_Achr10P...	Banana	cytosol	41.41	24.74
CDY23328	Canola	golgi, plasma membrane	65.2	23.87
KRG99502	Soybean	mitochondrion	51.1	22.39
KRH45493	Soybean	mitochondrion	51.1	22.39
KRH16896	Soybean	mitochondrion	49.34	22.09
KRH72501	Soybean	mitochondrion	49.34	21.79
KRH58850	Soybean	cytosol	44.93	21.29
KRH39500	Soybean	mitochondrion	48.46	21.28
KRH64758	Soybean	cytosol	44.05	20.08
KRH26369	Soybean	cytosol	47.14	19.01
KRH44066	Soybean	plastid	46.26	18.55
KRH42751	Soybean	endoplasmic reticulum, nucleus	46.26	18.36
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	44.05	18.25
KRH18830	Soybean	cytosol, peroxisome, plastid	1.32	2.33
KRH64759	Soybean	cytosol, peroxisome	0.0	0.0
KRH11116	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02009184	EnsemblPlants:KRH11117	EnsemblPlantsGene:GLYMA_15G090000	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674
GO:GO:0003824	InterPro:IPR015421	InterPro:IPR015422	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	PFAM:PF00464	ProteinID:KRH11117	ProteinID:KRH11117.1	SUPFAM:SSF53383
UniParc:UPI0006ED5273	UniProt:A0A0R0FY89	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:6922355..6924101

Molecular Weight (calculated)

24823.5 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.289

Length

227 amino acids

Sequence
(BLAST)

001: MQACTMMSSL QQQPIWTKGL NFPAKGYGSN NGFVTQLRFC NIKPSKASHV EASLVAGKPS SVSFSVPEIG GDGSSFLDYG LSEADPEVRA IIDKEKDRQF
101: KSLELIASEN FTSRAVMEAV GSCLTNKYSE GLPGRRYYGG NEYIDELETL CQQRALAAFH VDGNKWGVNV QTLSGSPANF AVFTAVLKPH DRIMGLDLPH
201: GGHLSHGFMT PKKRVSATSI YFEPMPY

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.