Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr10P... | |
GSMUA_Achr10P... | |
GSMUA_Achr7P08380_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G32520.1 | GSMUA_Achr10P... | AT3G15660.1 | 21798944 |
AT4G32520.1 | GSMUA_Achr7P08380_001 | AT3G15660.1 | 21798944 |
AT4G32520.1 | GSMUA_Achr10P... | AT4G32520.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH11116 | Soybean | cytosol | 45.26 | 70.49 |
VIT_04s0008g00770.t01 | Wine grape | plastid | 86.32 | 62.12 |
PGSC0003DMT400005611 | Potato | cytosol, plastid | 84.74 | 61.45 |
Solyc08g065490.2.1 | Tomato | nucleus, plastid | 84.47 | 61.26 |
AT4G32520.1 | Thale cress | plastid | 85.26 | 61.25 |
Solyc12g095930.1.1 | Tomato | plastid | 84.21 | 60.72 |
Bra040080.1-P | Field mustard | plastid | 84.47 | 60.68 |
PGSC0003DMT400075571 | Potato | plastid | 83.68 | 60.46 |
KRH26204 | Soybean | cytosol | 31.32 | 59.8 |
KRH21130 | Soybean | plastid | 83.68 | 59.33 |
CDY39889 | Canola | plastid | 84.47 | 55.34 |
GSMUA_Achr8P00310_001 | Banana | cytosol | 35.26 | 53.17 |
KRH07754 | Soybean | cytosol, nucleus, peroxisome | 30.0 | 52.78 |
GSMUA_Achr6P06520_001 | Banana | cytosol | 61.32 | 52.36 |
CDY23328 | Canola | golgi, plasma membrane | 84.47 | 51.77 |
GSMUA_Achr9P01620_001 | Banana | cytosol | 58.42 | 50.68 |
GSMUA_Achr7P27360_001 | Banana | mitochondrion | 66.84 | 49.42 |
GSMUA_Achr6P23140_001 | Banana | mitochondrion | 67.11 | 49.04 |
GSMUA_Achr9P07310_001 | Banana | cytosol | 52.11 | 48.89 |
GSMUA_Achr3P30760_001 | Banana | mitochondrion | 64.47 | 46.76 |
KRH11117 | Soybean | plastid | 24.74 | 41.41 |
GSMUA_Achr10P... | Banana | cytosol | 53.95 | 35.65 |
GSMUA_Achr6P17750_001 | Banana | cytosol | 53.42 | 35.49 |
PGSC0003DMT400002684 | Potato | plastid | 19.21 | 34.6 |
GSMUA_Achr10P... | Banana | vacuole | 14.47 | 32.35 |
Protein Annotations
KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 | GO:GO:0005488 |
GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0016740 | GO:GO:0019264 | GO:GO:0030170 | GO:GO:0035999 | EnsemblPlantsGene:GSMUA_Achr10G21340_001 | EnsemblPlants:GSMUA_Achr10P21340_001 |
EnsemblPlants:GSMUA_Achr10T21340_001 | InterPro:IPR015421 | InterPro:IPR015422 | UniProt:M0RK59 | HAMAP:MF_00051 | PFAM:PF00464 |
PIRSF:PIRSF000412 | ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF20 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 |
InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS | UniParc:UPI000295642B | : |
Description
Serine hydroxymethyltransferase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr10G21340_001]
Coordinates
chr10:+:27000710..27004716
Molecular Weight (calculated)
41442.9 Da
IEP (calculated)
6.838
GRAVY (calculated)
-0.137
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASGSCLTN KYSEGLPGKR YYGGNEYIDQ VETLCQQRAL EAFHLDKHKW GVNVQPLSGS PANFEVYTAL LSPHDRIMGL DLPHGGHLSH GFMTPKRRVS
101: GTSIFFESMP YRLDESTGFV DYDMLEKTAL LFRPKLIIAG ASAYPRDFDY PCMRKIADAV GAFLMMDMAH ISGLVAAEVA ADPFEYCDVV TTTTHKSLRG
201: PRGGMIFYKK DLVLGVDLES AISNAVFPGL QGGPHNHTIA ALAVCLKHAQ SPEFKAYQSQ VISNCKTLAT RLVELGYKLV SGGTDNHLVL VDLRPQGIDG
301: ARVEKILDIS SITLNKNSVP GDKSAMVPGG IRIGTPAMTT RGLKEKDFEA VADFIHEGES VSELKKKVEA LTNQFPMPGV
101: GTSIFFESMP YRLDESTGFV DYDMLEKTAL LFRPKLIIAG ASAYPRDFDY PCMRKIADAV GAFLMMDMAH ISGLVAAEVA ADPFEYCDVV TTTTHKSLRG
201: PRGGMIFYKK DLVLGVDLES AISNAVFPGL QGGPHNHTIA ALAVCLKHAQ SPEFKAYQSQ VISNCKTLAT RLVELGYKLV SGGTDNHLVL VDLRPQGIDG
301: ARVEKILDIS SITLNKNSVP GDKSAMVPGG IRIGTPAMTT RGLKEKDFEA VADFIHEGES VSELKKKVEA LTNQFPMPGV
001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
Arabidopsis Description
SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.