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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 3
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH11116 Soybean cytosol 45.26 70.49
VIT_04s0008g00770.t01 Wine grape plastid 86.32 62.12
PGSC0003DMT400005611 Potato cytosol, plastid 84.74 61.45
Solyc08g065490.2.1 Tomato nucleus, plastid 84.47 61.26
AT4G32520.1 Thale cress plastid 85.26 61.25
Solyc12g095930.1.1 Tomato plastid 84.21 60.72
Bra040080.1-P Field mustard plastid 84.47 60.68
PGSC0003DMT400075571 Potato plastid 83.68 60.46
KRH26204 Soybean cytosol 31.32 59.8
KRH21130 Soybean plastid 83.68 59.33
CDY39889 Canola plastid 84.47 55.34
GSMUA_Achr8P00310_001 Banana cytosol 35.26 53.17
KRH07754 Soybean cytosol, nucleus, peroxisome 30.0 52.78
GSMUA_Achr6P06520_001 Banana cytosol 61.32 52.36
CDY23328 Canola golgi, plasma membrane 84.47 51.77
GSMUA_Achr9P01620_001 Banana cytosol 58.42 50.68
GSMUA_Achr7P27360_001 Banana mitochondrion 66.84 49.42
GSMUA_Achr6P23140_001 Banana mitochondrion 67.11 49.04
GSMUA_Achr9P07310_001 Banana cytosol 52.11 48.89
GSMUA_Achr3P30760_001 Banana mitochondrion 64.47 46.76
KRH11117 Soybean plastid 24.74 41.41
GSMUA_Achr10P... Banana cytosol 53.95 35.65
GSMUA_Achr6P17750_001 Banana cytosol 53.42 35.49
PGSC0003DMT400002684 Potato plastid 19.21 34.6
GSMUA_Achr10P... Banana vacuole 14.47 32.35
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10GO:GO:0003674GO:GO:0003824GO:GO:0004372GO:GO:0005488
GO:GO:0006545GO:GO:0006730GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016740GO:GO:0019264GO:GO:0030170GO:GO:0035999EnsemblPlantsGene:GSMUA_Achr10G21340_001EnsemblPlants:GSMUA_Achr10P21340_001
EnsemblPlants:GSMUA_Achr10T21340_001InterPro:IPR015421InterPro:IPR015422UniProt:M0RK59HAMAP:MF_00051PFAM:PF00464
PIRSF:PIRSF000412ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF20InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI000295642B:
Description
Serine hydroxymethyltransferase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr10G21340_001]
Coordinates
chr10:+:27000710..27004716
Molecular Weight (calculated)
41442.9 Da
IEP (calculated)
6.838
GRAVY (calculated)
-0.137
Length
380 amino acids
Sequence
(BLAST)
001: MEASGSCLTN KYSEGLPGKR YYGGNEYIDQ VETLCQQRAL EAFHLDKHKW GVNVQPLSGS PANFEVYTAL LSPHDRIMGL DLPHGGHLSH GFMTPKRRVS
101: GTSIFFESMP YRLDESTGFV DYDMLEKTAL LFRPKLIIAG ASAYPRDFDY PCMRKIADAV GAFLMMDMAH ISGLVAAEVA ADPFEYCDVV TTTTHKSLRG
201: PRGGMIFYKK DLVLGVDLES AISNAVFPGL QGGPHNHTIA ALAVCLKHAQ SPEFKAYQSQ VISNCKTLAT RLVELGYKLV SGGTDNHLVL VDLRPQGIDG
301: ARVEKILDIS SITLNKNSVP GDKSAMVPGG IRIGTPAMTT RGLKEKDFEA VADFIHEGES VSELKKKVEA LTNQFPMPGV
Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)
001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
Arabidopsis Description
SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.