CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92643
CDY03441
CDY11021
CDY34291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37930.1	CDX92643	AT4G24560.1	23232097
AT4G37930.1	CDY03441	AT4G24560.1	23232097
AT4G37930.1	CDY11021	AT4G24560.1	23232097
AT4G37930.1	CDY34291	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49684	Canola	mitochondrion	100.0	67.7
Bra010622.1-P	Field mustard	mitochondrion	99.14	67.12
AT4G37930.1	Thale cress	mitochondrion	98.57	66.73
CDX75685	Canola	mitochondrion	98.29	66.54
CDX69344	Canola	mitochondrion	98.0	66.34
Os03t0738400-01	Rice	mitochondrion	89.14	60.82
TraesCS4B01G069300.1	Wheat	mitochondrion	88.0	60.39
TraesCS4A01G246100.1	Wheat	mitochondrion	88.0	60.39
TraesCS4D01G068100.1	Wheat	mitochondrion	88.0	60.39
OQU91027	Sorghum	mitochondrion	88.0	60.04
CDY49212	Canola	mitochondrion	86.0	59.14
CDX96315	Canola	mitochondrion	86.57	58.95
HORVU4Hr1G011500.1	Barley	plasma membrane	88.29	57.97
CDX72795	Canola	mitochondrion	86.29	56.98
CDY69223	Canola	cytosol	56.29	41.83
CDY47310	Canola	cytosol	48.86	39.4
CDY01173	Canola	cytosol	48.57	39.17
CDY50421	Canola	cytosol	48.57	39.17
CDY39889	Canola	plastid	54.29	32.76
CDY23328	Canola	golgi, plasma membrane	54.29	30.65
CDY47659	Canola	cytosol	11.71	30.15
CDY53135	Canola	cytosol	11.71	30.15
CDY30643	Canola	cytosol	48.86	29.53
CDY41499	Canola	cytosol	48.0	29.42
CDY38837	Canola	cytosol	47.14	29.31
CDY04695	Canola	cytosol	48.86	29.13
CDX91734	Canola	cytosol	48.29	28.69
CDY41886	Canola	cytosol	48.0	28.47
CDX68316	Canola	mitochondrion	86.29	25.81
Zm00001d009738_P001	Maize	cytosol, plastid	6.29	10.14

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078DMK5	EnsemblPlants:CDX90395	ProteinID:CDX90395	ProteinID:CDX90395.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999
EnsemblPlantsGene:GSBRNA2T00150997001	InterPro:IPR015421	InterPro:IPR015422	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201
MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288
UniParc:UPI0004EEA633	:	:	:	:	:

Description

BnaA08g15890D

Coordinates

chrLK031862:+:1557681..1559653

Molecular Weight (calculated)

38475.2 Da

IEP (calculated)

9.186

GRAVY (calculated)

-0.271

Length

350 amino acids

Sequence
(BLAST)

001: MALDLPHGGH LSHGYQTDTK KISAVSIFFE TMPYRLDEST GYIDYDQMEK SATLFRPKLI VAGASAYARL YDYARIRKVC NKQKAVMLAD MAHISGLVAA
101: GVIPSPFDYA DVVTTTTHKS LRGPRGAMIF YRKGVKEINK QGKEVLYDFE DKINQAVFPG LQGGPHNHTI TGLAVALKQA TTSEYKAYQE QVLSNSAKFA
201: QTLMEKGYEL VSGGTDNHLV LVNLKPKGID GSRVEKVLEA VHIASNKNTV PGDVSAMVPG GIRMGTPALT SRGFVEEDFA KVAEYFDKAV TLALKVKSEA
301: QGTKLKDFVS AMEASSTIQS EIAKLRHEVE EFAKQFPTIG FEKETMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.