Factsheet for Zm00001d012247_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042661_P001	Maize	cytosol	94.87	94.39
EES01843	Sorghum	cytosol	95.38	94.1
TraesCS3B01G417800.1	Wheat	cytosol	80.34	91.26
TraesCS3D01G378700.1	Wheat	cytosol	88.89	89.19
TraesCS3A01G385600.1	Wheat	cytosol	88.72	88.72
HORVU3Hr1G082070.2	Barley	cytosol	87.86	87.56
Os01t0874900-01	Rice	extracellular	87.86	85.67
KRH64759	Soybean	cytosol, peroxisome	12.99	73.08
KRH26369	Soybean	cytosol	69.91	72.65
KRH44066	Soybean	plastid	68.89	71.2
Zm00001d040457_P001	Maize	mitochondrion	11.79	71.13
VIT_12s0034g02380.t01	Wine grape	cytosol	68.55	69.5
GSMUA_Achr6P17750_001	Banana	cytosol	67.01	68.53
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	66.67	66.78
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	61.88	66.06
PGSC0003DMT400061157	Potato	cytosol	66.84	65.82
Solyc01g104000.2.1	Tomato	plastid	66.5	65.49
GSMUA_Achr10P...	Banana	cytosol	64.1	65.22
CDY38837	Canola	cytosol	62.56	65.01
CDY41499	Canola	cytosol	62.56	64.1
Bra016392.1-P	Field mustard	cytosol	63.25	64.01
CDY30643	Canola	cytosol	63.08	63.73
CDY41886	Canola	cytosol	64.27	63.73
Bra036774.1-P	Field mustard	cytosol	64.1	63.56
CDX91734	Canola	cytosol	63.76	63.33
Bra031358.1-P	Field mustard	cytosol	63.08	63.29
AT1G36370.1	Thale cress	plastid	64.62	63.21
CDY04695	Canola	cytosol	62.73	62.52
AT1G22020.1	Thale cress	cytosol	62.73	61.27
KRH64758	Soybean	cytosol	48.89	57.43
Zm00001d049234_P001	Maize	plastid	49.57	55.13
GSMUA_Achr10P...	Banana	vacuole	14.87	51.18
Zm00001d030859_P001	Maize	plastid	51.28	47.69
Zm00001d009738_P001	Maize	cytosol, plastid	14.02	37.79

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	UniProt:A0A1D6G7R9	ProteinID:AQK99194.1	ProteinID:AQK99196.1
ProteinID:AQK99197.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00678	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	UniParc:UPI0008442908	InterPro:WD40_repeat_CS
EnsemblPlantsGene:Zm00001d012247	EnsemblPlants:Zm00001d012247_P001	EnsemblPlants:Zm00001d012247_T001	SEG:seg	:	:

Description

Serine hydroxymethyltransferase 7

Coordinates

chr8:-:170932391..170938209

Molecular Weight (calculated)

63657.5 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.358

Length

585 amino acids

Sequence
(BLAST)

001: MDLSRPASSD LSLGLHSHAH AHARVHAAAA PLRLFDDAKP ERLVAGEADA ERDDGDGGDQ HFSLLGHSLC VKRPRRAVNG GGGGGGETSS CSSTSPALRP
101: AKRQAAGEDS GADLETRRAA VRSWGNQSLA EADPDVHSLM EQELARQVRG IELIASENFV CRAVLDALGS HLTNKYSEGA PGARYYGGNQ HIDAIERLCH
201: ERALTAFGLD PACWGVNVQP YSCTSANLAV YTGLLQPKDR IMGLEPPSGG HVSHGYYTPS GKKVSGASIF FESMSYKVNP QTGYIDYDKL EERAMDFHPK
301: ILICGGSSYP REWDFARMRL VADKCGAVLL CDMAHISGLV AAKECRSPFD YCDVVTSTTH KNLRGPRGGI IFFRKGKNLR KRAGSFSQGD ENEYDFEDRI
401: NFGVFPSMQG GPHNNHIAAL AITLKQVATP EYKAYIQQVK KNAQALASAL LRRKCRLVTG GTDNHLILWD LRTLGLTGKI FEKVCEACHI SINKTPIYGD
501: NGSISPGGVR IGTPAMTTRG CLEEDFESIA DFLIRSTQIA SNVLKEHGKV QKEFLRGLMN NKDVMELRNQ VEAFASQFAM PGFDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.