Factsheet for PGSC0003DMT400083870

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002684
PGSC0003DMT400012249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT4G08520.1	PGSC0003DMT400002684	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044910.1.1	Tomato	cytosol	100.0	100.0
PGSC0003DMT400006628	Potato	cytosol	88.52	88.04
VIT_09s0002g01710.t01	Wine grape	cytosol	81.42	81.42
PGSC0003DMT400007924	Potato	cytosol	74.32	76.84
KRH44115	Soybean	cytosol	75.41	76.67
KRH23291	Soybean	endoplasmic reticulum	74.86	75.69
Os02t0317400-01	Rice	cytosol	73.77	74.18
KXG35813	Sorghum	cytosol	73.77	74.18
CDY36196	Canola	cytosol	72.68	73.48
TraesCS5B01G165500.2	Wheat	cytosol	72.13	72.53
CDX75151	Canola	cytosol	71.58	72.38
CDY41585	Canola	cytosol	71.58	72.38
CDY44731	Canola	cytosol	71.58	72.38
TraesCS5D01G173000.1	Wheat	cytosol	71.58	71.98
AT4G08520.1	Thale cress	cytosol	71.04	71.82
CDX73995	Canola	cytosol	71.58	71.2
Bra001298.1-P	Field mustard	cytosol	71.58	71.2
CDY41313	Canola	cytosol	71.04	70.65
CDY22204	Canola	cytosol	71.04	70.65
Bra029790.1-P	Field mustard	cytosol	56.28	70.07
Zm00001d020783_P005	Maize	mitochondrion	74.32	67.0
Bra037861.1-P	Field mustard	extracellular	50.27	66.67
KRH47095	Soybean	endoplasmic reticulum	68.31	66.49
TraesCS5A01G168700.2	Wheat	cytosol	72.13	58.67
CDY07940	Canola	cytosol	71.04	54.39
AT3G09800.6	Thale cress	cytosol	72.13	50.97
Os09t0251450-00	Rice	extracellular	20.22	45.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400083870	EnsemblPlantsGene:PGSC0003DMG400033637	EntrezGene:102599693	Gene3D:3.30.450.60	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf
PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	PFAM:PF01217	PGSC:PGSC0003DMG400033637	RefSeq:XP_006366160.1	SEG:seg
SUPFAM:SSF64356	UniParc:UPI00000AB50B	UniProt:M1D789	MapMan:22.3.1.4.4	:	:

Description

Nonclathrin coat protein zeta2-COP [Source:PGSC_GENE;Acc:PGSC0003DMG400033637]

Coordinates

chr12:-:51907948..51911379

Molecular Weight (calculated)

20367.4 Da

IEP (calculated)

4.465

GRAVY (calculated)

0.020

Length

183 amino acids

Sequence
(BLAST)

001: MAFPLHYGSC PVVKNILLLD SEGKRVAVKY YCDDWPTYSA KLAFEKSIFT KTQKTNARTE AEIAMFDSNI VVYKFVQDLH FFVTGGDDEN ELILATVLQG
101: FYDAVTLLLR SNVEQREALE NLDLILLCLD EIVDGGMILE TDGSVIAGKV ASHNMDDGSP ISEQTISQAL ATAREHLTRS LLR

Best Arabidopsis Sequence Match ( AT1G60970.1 )
(BLAST)

001: MELPPKVKNI LLLDSEGKRV AVKYYSDDWP TNSAQEAFEK SVFTKTQKTN ARTEVEVTAL ENNIVVYKFV QDLHFFVTGG EEENELILAS VLEGLFDAVT
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK

Arabidopsis Description

Coatomer subunit zeta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q940S5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.