Factsheet for PGSC0003DMT400006628

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002684
PGSC0003DMT400012249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT4G08520.1	PGSC0003DMT400002684	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121800.2.1	Tomato	plastid	98.37	98.37
PGSC0003DMT400083870	Potato	cytosol	88.04	88.52
VIT_09s0002g01710.t01	Wine grape	cytosol	79.35	79.78
KRH44115	Soybean	cytosol	77.17	78.89
PGSC0003DMT400007924	Potato	cytosol	75.0	77.97
KRH23291	Soybean	endoplasmic reticulum	76.09	77.35
CDY36196	Canola	cytosol	75.0	76.24
CDX75151	Canola	cytosol	74.46	75.69
CDY44731	Canola	cytosol	74.46	75.69
CDY41585	Canola	cytosol	74.46	75.69
AT4G08520.1	Thale cress	cytosol	73.91	75.14
CDX73995	Canola	cytosol	75.0	75.0
Bra001298.1-P	Field mustard	cytosol	75.0	75.0
CDY41313	Canola	cytosol	74.46	74.46
CDY22204	Canola	cytosol	74.46	74.46
Os02t0317400-01	Rice	cytosol	72.28	73.08
KXG35813	Sorghum	cytosol	71.74	72.53
Bra029790.1-P	Field mustard	cytosol	57.61	72.11
TraesCS5D01G173000.1	Wheat	cytosol	70.65	71.43
TraesCS5B01G165500.2	Wheat	cytosol	70.11	70.88
Bra037861.1-P	Field mustard	extracellular	51.09	68.12
KRH47095	Soybean	endoplasmic reticulum	69.57	68.09
Zm00001d020783_P005	Maize	mitochondrion	72.28	65.52
TraesCS5A01G168700.2	Wheat	cytosol	70.11	57.33
CDY07940	Canola	cytosol	74.46	57.32
AT3G09800.6	Thale cress	cytosol	72.83	51.74
Os09t0251450-00	Rice	extracellular	19.02	42.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400006628	EnsemblPlantsGene:PGSC0003DMG400002579	EntrezGene:102583032	Gene3D:3.30.450.60	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf
PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	PFAM:PF01217	PGSC:PGSC0003DMG400002579	RefSeq:XP_006342966.1	SEG:seg
SUPFAM:SSF64356	UniParc:UPI000294BCF5	UniProt:M0ZRQ9	MapMan:22.3.1.4.4	:	:

Description

Nonclathrin coat protein zeta1-COP [Source:PGSC_GENE;Acc:PGSC0003DMG400002579]

Coordinates

chr3:+:61043932..61046614

Molecular Weight (calculated)

20535.5 Da

IEP (calculated)

4.338

GRAVY (calculated)

-0.060

Length

184 amino acids

Sequence
(BLAST)

001: MAGFLLNYDS CPVVKNILLL DSEGKRVAVK YYSDDWPTNS AKVAFEKSIF TKTQKTNART EAEITMFENN IIVYKFVQDL HFFVTGGDDE NELVLATVLQ
101: GFYDAVTLLL RNNVEQREAL ENLDLILLCL DEIVDGGMVL ETDGNIIAGK VSSHNMDDGA PLSEQTITQA LATAREHLTR SLLR

Best Arabidopsis Sequence Match ( AT4G08520.1 )
(BLAST)

001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T

Arabidopsis Description

Coatomer subunit zeta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.