Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G376000.1 | Wheat | plastid | 96.02 | 96.88 |
| TraesCS3D01G368500.1 | Wheat | plastid | 95.58 | 95.15 |
| HORVU3Hr1G083700.1 | Barley | plastid | 92.48 | 93.3 |
| Os01t0864000-01 | Rice | mitochondrion, plastid | 76.99 | 76.32 |
| EES03931 | Sorghum | plastid | 76.99 | 73.73 |
| Zm00001d012282_P001 | Maize | nucleus, plastid | 74.34 | 68.02 |
| Zm00001d042752_P001 | Maize | nucleus, plastid | 73.89 | 67.89 |
| GSMUA_Achr6P19470_001 | Banana | nucleus | 44.69 | 54.3 |
| TraesCS1B01G284700.1 | Wheat | plastid | 52.65 | 52.65 |
| GSMUA_Achr9P02660_001 | Banana | mitochondrion | 37.61 | 42.93 |
| GSMUA_Achr6P18350_001 | Banana | mitochondrion | 35.84 | 37.5 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 36.73 | 37.39 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 28.76 | 35.71 |
| Solyc11g068780.1.1 | Tomato | cytosol | 21.24 | 35.04 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 28.32 | 34.78 |
| PGSC0003DMT400050511 | Potato | cytosol | 20.8 | 33.81 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 25.66 | 32.58 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 26.55 | 32.26 |
| KRH72226 | Soybean | mitochondrion | 24.34 | 31.61 |
| KRH67981 | Soybean | mitochondrion | 26.55 | 31.58 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 26.11 | 31.22 |
| KRH32810 | Soybean | mitochondrion | 24.34 | 31.07 |
| KRG96237 | Soybean | mitochondrion | 26.11 | 30.89 |
| AT3G52525.1 | Thale cress | plastid | 19.91 | 28.3 |
| CDX75076 | Canola | nucleus | 23.01 | 27.96 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 22.57 | 27.42 |
| CDY43753 | Canola | nucleus | 22.12 | 26.88 |
| Bra017266.1-P | Field mustard | nucleus | 22.12 | 26.88 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 21.68 | 26.78 |
| KRH26670 | Soybean | mitochondrion | 20.8 | 25.27 |
| KRH22646 | Soybean | mitochondrion, nucleus | 19.47 | 23.91 |
| KRH30374 | Soybean | nucleus, plastid | 20.8 | 23.86 |
| KRH25295 | Soybean | nucleus, plastid | 20.35 | 23.59 |
| TraesCS1B01G193300.1 | Wheat | mitochondrion | 25.22 | 23.17 |
| TraesCS6B01G267100.1 | Wheat | plastid | 21.24 | 16.11 |
| TraesCS4B01G319700.1 | Wheat | plastid | 21.24 | 15.74 |
| TraesCS4B01G262000.1 | Wheat | mitochondrion | 19.03 | 15.58 |
| TraesCS2B01G123000.1 | Wheat | nucleus | 18.58 | 15.38 |
| TraesCS2B01G410500.1 | Wheat | mitochondrion | 16.81 | 15.02 |
| TraesCS3B01G255700.1 | Wheat | nucleus | 22.12 | 14.93 |
| TraesCS4B01G168800.1 | Wheat | mitochondrion, nucleus, plastid | 17.7 | 14.55 |
| TraesCS3B01G178800.1 | Wheat | nucleus | 21.68 | 13.84 |
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 21.24 | 12.83 |
| TraesCS3B01G324100.1 | Wheat | nucleus | 15.93 | 12.37 |
| TraesCS3B01G377200.1 | Wheat | mitochondrion, nucleus | 18.58 | 11.6 |
| TraesCS1B01G310200.1 | Wheat | mitochondrion, plastid | 18.14 | 11.48 |
| TraesCS1B01G350500.1 | Wheat | cytosol, mitochondrion, nucleus | 15.93 | 10.43 |
Protein Annotations
| MapMan:15.5.37 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0045892 | GO:GO:1900457 | InterPro:IPR006458 | InterPro:Ovate |
| InterPro:Ovate_C | PFAM:PF04844 | PFscan:PS51754 | PANTHER:PTHR33057 | PANTHER:PTHR33057:SF64 | TIGRFAMs:TIGR01568 |
| EnsemblPlantsGene:TraesCS3B01G408300 | EnsemblPlants:TraesCS3B01G408300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:-:643857017..643857899
Molecular Weight (calculated)
24948.9 Da
IEP (calculated)
10.351
GRAVY (calculated)
-0.743
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKPSSRRS SFTLRQPPVV DVGCNCRRPK LFSSLFSSSS LPFRGRGGKP KSPNASSTST TTAFTATTLG GRSGTTATSA DSASWGPASF TNNSLYEDPA
101: AAARHRGQEP EQDTRRRRRQ RRRRRRAAWD GGVGGGHGEQ DAEAYGRVAR ESVPVAVESA EPYEDFRESM VQMVVEKEIY AWDDLNDLLT QFLTLNSPRH
201: HPLILHAFAD LWTRNGLFSP PSPCQF
101: AAARHRGQEP EQDTRRRRRQ RRRRRRAAWD GGVGGGHGEQ DAEAYGRVAR ESVPVAVESA EPYEDFRESM VQMVVEKEIY AWDDLNDLLT QFLTLNSPRH
201: HPLILHAFAD LWTRNGLFSP PSPCQF
001: MTTGKSKKKK MVLKAVSVVD IGCGNCKFPS LSSFFNPSPK KPRLYSSNYG HCHSSTPTTA SSSSAVPSTS HWFSDTSSSS ATPSAAAVAV EKDSDDPYLD
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
Arabidopsis Description
Ovate family protein [Source:UniProtKB/TrEMBL;Acc:B3H6R4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.