Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G258000.1 | Wheat | plastid | 91.61 | 93.49 |
| TraesCS6D01G239400.1 | Wheat | plastid | 92.62 | 93.24 |
| HORVU6Hr1G065900.1 | Barley | mitochondrion, plastid | 90.6 | 90.91 |
| Os02t0679700-01 | Rice | plastid | 61.74 | 65.48 |
| OQU85631 | Sorghum | plastid | 57.05 | 55.19 |
| Zm00001d017606_P001 | Maize | plastid | 52.35 | 53.42 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 28.52 | 48.85 |
| Os01t0831800-00 | Rice | plastid | 42.62 | 45.85 |
| GSMUA_Achr11P... | Banana | plastid | 24.5 | 42.44 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 25.84 | 39.29 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 26.85 | 38.65 |
| TraesCS1B01G193300.1 | Wheat | mitochondrion | 31.54 | 38.21 |
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 45.97 | 36.63 |
| Solyc11g068780.1.1 | Tomato | cytosol | 15.77 | 34.31 |
| PGSC0003DMT400050511 | Potato | cytosol | 15.77 | 33.81 |
| KRG96237 | Soybean | mitochondrion | 20.13 | 31.41 |
| KRH32810 | Soybean | mitochondrion | 18.46 | 31.07 |
| AT3G52525.1 | Thale cress | plastid | 16.44 | 30.82 |
| KRH67981 | Soybean | mitochondrion | 19.46 | 30.53 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 18.46 | 30.05 |
| KRH72226 | Soybean | mitochondrion | 17.45 | 29.89 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 18.46 | 29.57 |
| KRH22646 | Soybean | mitochondrion, nucleus | 17.79 | 28.8 |
| KRH26670 | Soybean | mitochondrion | 17.45 | 27.96 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 17.45 | 27.96 |
| CDX75076 | Canola | nucleus | 17.45 | 27.96 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 17.11 | 27.72 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 16.44 | 27.53 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 16.78 | 27.47 |
| CDY43753 | Canola | nucleus | 17.11 | 27.42 |
| Bra017266.1-P | Field mustard | nucleus | 17.11 | 27.42 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 17.11 | 26.98 |
| KRH30374 | Soybean | nucleus, plastid | 16.11 | 24.37 |
| KRH25295 | Soybean | nucleus, plastid | 15.77 | 24.1 |
| TraesCS4B01G319700.1 | Wheat | plastid | 24.5 | 23.93 |
| TraesCS3B01G408300.1 | Wheat | plastid | 16.11 | 21.24 |
| TraesCS1B01G284700.1 | Wheat | plastid | 14.43 | 19.03 |
| TraesCS4B01G262000.1 | Wheat | mitochondrion | 15.1 | 16.3 |
| TraesCS3B01G324100.1 | Wheat | nucleus | 15.1 | 15.46 |
| TraesCS2B01G410500.1 | Wheat | mitochondrion | 12.75 | 15.02 |
| TraesCS3B01G178800.1 | Wheat | nucleus | 17.11 | 14.41 |
| TraesCS2B01G123000.1 | Wheat | nucleus | 13.09 | 14.29 |
| TraesCS3B01G255700.1 | Wheat | nucleus | 15.44 | 13.73 |
| TraesCS4B01G168800.1 | Wheat | mitochondrion, nucleus, plastid | 12.08 | 13.09 |
| TraesCS1B01G310200.1 | Wheat | mitochondrion, plastid | 14.77 | 12.32 |
| TraesCS3B01G377200.1 | Wheat | mitochondrion, nucleus | 14.43 | 11.88 |
| TraesCS1B01G350500.1 | Wheat | cytosol, mitochondrion, nucleus | 13.09 | 11.3 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G267100.1 | EnsemblPlantsGene:TraesCS6B01G267100 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF6 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr6B:-:480653695..480654768
Molecular Weight (calculated)
31753.4 Da
IEP (calculated)
8.670
GRAVY (calculated)
-0.493
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSPGISVKK RHGGAGFALG CGCKDAKSVS VVPASVSASP SPSGAGTSTT TETRRRGGRA NPSASMTTDT LTSASSSSLL WEDAVAEFEC GDDGHFKMEG
101: SAATQSFSGL LRELNELEQS VVSWGRKSHR NRDKKASTPP PEHKKATMKS GVKGGDVTTG GAKDRRVGDS VEPVTVDACV EVGLDGSVAV VKQSEDPLSD
201: FRQSMVQMIV ENGIIAGEEL RQMLRRFLTL NAPHHHDVIL RAFAEIWDAV FAASYVPVPA TAPPSKHTRR EEPADGRPPM PRTPPRHHHS PSPSAWRV
101: SAATQSFSGL LRELNELEQS VVSWGRKSHR NRDKKASTPP PEHKKATMKS GVKGGDVTTG GAKDRRVGDS VEPVTVDACV EVGLDGSVAV VKQSEDPLSD
201: FRQSMVQMIV ENGIIAGEEL RQMLRRFLTL NAPHHHDVIL RAFAEIWDAV FAASYVPVPA TAPPSKHTRR EEPADGRPPM PRTPPRHHHS PSPSAWRV
001: MTTGKSKKKK MVLKAVSVVD IGCGNCKFPS LSSFFNPSPK KPRLYSSNYG HCHSSTPTTA SSSSAVPSTS HWFSDTSSSS ATPSAAAVAV EKDSDDPYLD
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
Arabidopsis Description
Ovate family protein [Source:UniProtKB/TrEMBL;Acc:B3H6R4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.