Factsheet for TraesCS2B01G410500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G390300.1	Wheat	mitochondrion	96.84	96.08
TraesCS2A01G392200.1	Wheat	mitochondrion	94.86	93.39
HORVU2Hr1G093380.1	Barley	mitochondrion	87.75	87.06
EES17993	Sorghum	nucleus, plastid	56.13	57.49
Zm00001d009993_P001	Maize	nucleus, plastid	53.75	52.51
Os05t0324600-01	Rice	nucleus	52.96	51.54
TraesCS3B01G377200.1	Wheat	mitochondrion, nucleus	30.43	21.27
TraesCS2B01G123000.1	Wheat	nucleus	20.16	18.68
TraesCS4B01G168800.1	Wheat	mitochondrion, nucleus, plastid	19.76	18.18
TraesCS1B01G284700.1	Wheat	plastid	15.41	17.26
TraesCS3B01G324100.1	Wheat	nucleus	19.76	17.18
TraesCS3B01G408300.1	Wheat	plastid	15.02	16.81
TraesCS1B01G310200.1	Wheat	mitochondrion, plastid	23.72	16.81
TraesCS1B01G193300.1	Wheat	mitochondrion	15.81	16.26
TraesCS1B01G350500.1	Wheat	cytosol, mitochondrion, nucleus	20.55	15.07
TraesCS3B01G178800.1	Wheat	nucleus	18.97	13.56
TraesCS6B01G267100.1	Wheat	plastid	15.02	12.75
TraesCS4B01G262000.1	Wheat	mitochondrion	13.04	11.96
TraesCS3B01G255700.1	Wheat	nucleus	15.81	11.94
TraesCS2B01G415000.1	Wheat	mitochondrion	16.21	10.96
TraesCS4B01G319700.1	Wheat	plastid	13.04	10.82

Protein Annotations

MapMan:15.5.37	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754
PANTHER:PTHR33057	PANTHER:PTHR33057:SF5	TIGRFAMs:TIGR01568	EnsemblPlantsGene:TraesCS2B01G410500	EnsemblPlants:TraesCS2B01G410500.1	SEG:seg

Description

No Description!

Coordinates

chr2B:+:584105763..584106621

Molecular Weight (calculated)

28614.4 Da

IEP (calculated)

11.784

GRAVY (calculated)

-0.608

Length

253 amino acids

Sequence
(BLAST)

001: MGSHYRFRLS HLMPNSWFYK LRDMKRPRPP SQPRSCAATR TPRRSSSSHY CHGTSTPKPL PLPAHQSYSS YLQAKKMPPE KLRLSPLCLS PRATSIRFPN
101: DRHQSPSSRS AAAVFDDFQG LQLRPIRTRP APIASRSAHH STTASSTCPS SPRLRSRRLR LSSSGFGRVS ARCTARRRSA RRSIAVVVAS TDPHKDFRES
201: MVEMIVGTDM RGAEALRDLL DCYLSLNSRE YHGVITEVFR GIWLQIIRDG VEI

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.