Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G394400.1 | Wheat | mitochondrion | 96.52 | 94.5 |
| TraesCS2A01G396600.1 | Wheat | mitochondrion, plastid | 93.58 | 92.35 |
| HORVU2Hr1G094240.1 | Barley | cytosol, mitochondrion, plastid | 74.87 | 77.99 |
| Os04t0577700-01 | Rice | nucleus | 63.37 | 64.58 |
| Zm00001d002594_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 58.02 | 54.66 |
| EES11304 | Sorghum | plastid | 58.29 | 53.3 |
| Zm00001d026061_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 54.01 | 52.74 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 22.46 | 48.28 |
| TraesCS6B01G267100.1 | Wheat | plastid | 36.63 | 45.97 |
| GSMUA_Achr11P... | Banana | plastid | 20.32 | 44.19 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 23.53 | 42.51 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 21.39 | 40.82 |
| TraesCS1B01G193300.1 | Wheat | mitochondrion | 26.2 | 39.84 |
| Solyc11g068780.1.1 | Tomato | cytosol | 14.17 | 38.69 |
| PGSC0003DMT400050511 | Potato | cytosol | 13.64 | 36.69 |
| AT3G52525.1 | Thale cress | plastid | 14.44 | 33.96 |
| KRH22646 | Soybean | mitochondrion, nucleus | 16.04 | 32.61 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 15.51 | 32.58 |
| KRH26670 | Soybean | mitochondrion | 16.04 | 32.26 |
| KRH32810 | Soybean | mitochondrion | 15.24 | 32.2 |
| KRH72226 | Soybean | mitochondrion | 14.97 | 32.18 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 15.78 | 31.22 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 15.51 | 31.18 |
| KRH67981 | Soybean | mitochondrion | 15.78 | 31.05 |
| KRG96237 | Soybean | mitochondrion | 15.78 | 30.89 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 14.44 | 29.67 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 14.44 | 29.35 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 14.44 | 29.03 |
| CDX75076 | Canola | nucleus | 14.44 | 29.03 |
| CDY43753 | Canola | nucleus | 14.17 | 28.49 |
| Bra017266.1-P | Field mustard | nucleus | 14.17 | 28.49 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 13.9 | 28.42 |
| KRH30374 | Soybean | nucleus, plastid | 14.17 | 26.9 |
| TraesCS4B01G319700.1 | Wheat | plastid | 21.39 | 26.23 |
| KRH25295 | Soybean | nucleus, plastid | 13.64 | 26.15 |
| TraesCS3B01G408300.1 | Wheat | plastid | 12.83 | 21.24 |
| TraesCS1B01G284700.1 | Wheat | plastid | 12.57 | 20.8 |
| TraesCS4B01G262000.1 | Wheat | mitochondrion | 14.17 | 19.2 |
| TraesCS3B01G324100.1 | Wheat | nucleus | 13.1 | 16.84 |
| TraesCS3B01G255700.1 | Wheat | nucleus | 14.97 | 16.72 |
| TraesCS2B01G410500.1 | Wheat | mitochondrion | 10.96 | 16.21 |
| TraesCS2B01G123000.1 | Wheat | nucleus | 11.76 | 16.12 |
| TraesCS3B01G178800.1 | Wheat | nucleus | 14.71 | 15.54 |
| TraesCS1B01G310200.1 | Wheat | mitochondrion, plastid | 14.17 | 14.85 |
| TraesCS3B01G377200.1 | Wheat | mitochondrion, nucleus | 13.9 | 14.36 |
| TraesCS4B01G168800.1 | Wheat | mitochondrion, nucleus, plastid | 10.16 | 13.82 |
| TraesCS1B01G350500.1 | Wheat | cytosol, mitochondrion, nucleus | 12.03 | 13.04 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G415000.1 | EnsemblPlantsGene:TraesCS2B01G415000 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF6 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr2B:-:593017043..593018167
Molecular Weight (calculated)
40147.3 Da
IEP (calculated)
10.656
GRAVY (calculated)
-0.756
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHGVAARKR FGGVSFALGC GCKDPKAVAV AAAAVAASSP RSGTEASTAT TATSRRASRT HPSASTSTGT LTVPSASSSF LWEDADADAD EVECKRASSA
101: TTPSFSGLLR ELSELERSIK SCARTKSPPR NHFSPPPPPP PPPPPPPPLP SRPVQRRAVR GDDKPSVQEG HGDFSPPRPR PLPPPSLQVP TQQHRRVKSV
201: DKASKPEGDA HFTPQPPRPL PPPPPLEPLR SAKTEEDNKS KSKEDEKRSP TPQPAPKHRK AMSCDNSNGF GGGSGRLDGS VAVVKQSEDP LGDFRRSMLN
301: MIVENGIVTG DELRELLRRF LALNAPRHHD AILRAFAEIW DEVFAPAAAA TAEREPRPTA PRRRQPLPLP AWRV
101: TTPSFSGLLR ELSELERSIK SCARTKSPPR NHFSPPPPPP PPPPPPPPLP SRPVQRRAVR GDDKPSVQEG HGDFSPPRPR PLPPPSLQVP TQQHRRVKSV
201: DKASKPEGDA HFTPQPPRPL PPPPPLEPLR SAKTEEDNKS KSKEDEKRSP TPQPAPKHRK AMSCDNSNGF GGGSGRLDGS VAVVKQSEDP LGDFRRSMLN
301: MIVENGIVTG DELRELLRRF LALNAPRHHD AILRAFAEIW DEVFAPAAAA TAEREPRPTA PRRRQPLPLP AWRV
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.