Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G316300.1 | Wheat | nucleus, plastid | 66.56 | 89.82 |
| TraesCS5A01G492400.1 | Wheat | nucleus | 68.2 | 89.27 |
| HORVU4Hr1G083150.1 | Barley | plastid | 68.52 | 82.61 |
| EER92948 | Sorghum | plastid | 42.62 | 50.98 |
| Zm00001d027453_P001 | Maize | plastid | 40.0 | 49.39 |
| TraesCS1B01G193300.1 | Wheat | mitochondrion | 31.48 | 39.02 |
| Os03t0126450-00 | Rice | nucleus | 41.64 | 37.69 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 22.95 | 33.82 |
| GSMUA_Achr11P... | Banana | plastid | 17.7 | 31.4 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 19.67 | 30.61 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 17.38 | 30.46 |
| Solyc11g068780.1.1 | Tomato | cytosol | 12.79 | 28.47 |
| PGSC0003DMT400050511 | Potato | cytosol | 11.8 | 25.9 |
| AT3G52525.1 | Thale cress | plastid | 13.44 | 25.79 |
| TraesCS6B01G267100.1 | Wheat | plastid | 23.93 | 24.5 |
| KRH32810 | Soybean | mitochondrion | 13.11 | 22.6 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 13.11 | 22.47 |
| KRH72226 | Soybean | mitochondrion | 12.79 | 22.41 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 13.44 | 22.04 |
| TraesCS1B01G284700.1 | Wheat | plastid | 16.07 | 21.68 |
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 26.23 | 21.39 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 12.79 | 21.31 |
| TraesCS3B01G408300.1 | Wheat | plastid | 15.74 | 21.24 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 12.79 | 20.97 |
| Bra017266.1-P | Field mustard | nucleus | 12.79 | 20.97 |
| CDY43753 | Canola | nucleus | 12.79 | 20.97 |
| CDX75076 | Canola | nucleus | 12.79 | 20.97 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 12.79 | 20.63 |
| KRH67981 | Soybean | mitochondrion | 12.79 | 20.53 |
| KRH26670 | Soybean | mitochondrion | 12.46 | 20.43 |
| KRG96237 | Soybean | mitochondrion | 12.79 | 20.42 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 12.13 | 20.33 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 12.13 | 20.11 |
| KRH22646 | Soybean | mitochondrion, nucleus | 12.13 | 20.11 |
| KRH30374 | Soybean | nucleus, plastid | 12.13 | 18.78 |
| KRH25295 | Soybean | nucleus, plastid | 11.8 | 18.46 |
| TraesCS4B01G262000.1 | Wheat | mitochondrion | 14.1 | 15.58 |
| TraesCS3B01G255700.1 | Wheat | nucleus | 15.74 | 14.33 |
| TraesCS3B01G324100.1 | Wheat | nucleus | 13.44 | 14.09 |
| TraesCS4B01G168800.1 | Wheat | mitochondrion, nucleus, plastid | 11.8 | 13.09 |
| TraesCS2B01G410500.1 | Wheat | mitochondrion | 10.82 | 13.04 |
| TraesCS2B01G123000.1 | Wheat | nucleus | 11.15 | 12.45 |
| TraesCS3B01G178800.1 | Wheat | nucleus | 13.77 | 11.86 |
| TraesCS3B01G377200.1 | Wheat | mitochondrion, nucleus | 13.77 | 11.6 |
| TraesCS1B01G350500.1 | Wheat | cytosol, mitochondrion, nucleus | 12.13 | 10.72 |
| TraesCS1B01G310200.1 | Wheat | mitochondrion, plastid | 12.13 | 10.36 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G319700.1 | EnsemblPlantsGene:TraesCS4B01G319700 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | ncoils:Coil |
| PANTHER:PTHR33057 | PANTHER:PTHR33057:SF34 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 |
| MapMan:15.5.37 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:610434316..610435485
Molecular Weight (calculated)
32384.6 Da
IEP (calculated)
10.246
GRAVY (calculated)
-0.306
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVCLCSLHT PLECNVPATK ELCDAGAAAS WRARFHSTRL FLSPSSSSFS SLSYLASQVA RPVTHTALEN QGVKATTPRG GGADTAKSKK RKKAGAGGFI
101: FGCGGSRSVA VVAGNLSTMA LAKSSSSSSA APTAKPAPAA KPTAPVCHDA EGAPSVDALL RQLQELERGV RALGVRVLEE DGVAQACRCS ARSPRYRRDA
201: WGGRRGRLEE ESVAVVTETE DPLGEFRRSM AEMVVENGIT GGAELRELLQ RFLSLNAARH HHLILRAFAD VWEELFAGPG RDPMQKQKQK RPVVSPAGHS
301: ARASS
101: FGCGGSRSVA VVAGNLSTMA LAKSSSSSSA APTAKPAPAA KPTAPVCHDA EGAPSVDALL RQLQELERGV RALGVRVLEE DGVAQACRCS ARSPRYRRDA
201: WGGRRGRLEE ESVAVVTETE DPLGEFRRSM AEMVVENGIT GGAELRELLQ RFLSLNAARH HHLILRAFAD VWEELFAGPG RDPMQKQKQK RPVVSPAGHS
301: ARASS
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.