Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G338100.1 | Wheat | cytosol | 91.3 | 91.84 |
| TraesCS1D01G340300.1 | Wheat | nucleus | 91.01 | 91.01 |
| HORVU1Hr1G076490.1 | Barley | nucleus | 83.19 | 80.85 |
| Os05t0517100-00 | Rice | mitochondrion | 49.57 | 54.11 |
| Zm00001d038714_P001 | Maize | nucleus | 48.41 | 53.02 |
| EES19813 | Sorghum | nucleus | 51.01 | 52.54 |
| TraesCS3B01G324100.1 | Wheat | nucleus | 38.55 | 45.7 |
| GSMUA_Achr9P05640_001 | Banana | nucleus | 32.17 | 38.41 |
| GSMUA_Achr6P31770_001 | Banana | nucleus | 31.59 | 37.2 |
| TraesCS4B01G168800.1 | Wheat | mitochondrion, nucleus, plastid | 21.74 | 27.27 |
| VIT_10s0003g01750.t01 | Wine grape | nucleus | 14.49 | 25.64 |
| TraesCS2B01G123000.1 | Wheat | nucleus | 20.0 | 25.27 |
| CDY09258 | Canola | mitochondrion | 19.13 | 20.62 |
| TraesCS2B01G410500.1 | Wheat | mitochondrion | 15.07 | 20.55 |
| CDX99420 | Canola | mitochondrion | 19.42 | 20.49 |
| Bra020989.1-P | Field mustard | mitochondrion | 18.84 | 20.25 |
| CDX78899 | Canola | mitochondrion | 18.84 | 19.94 |
| Bra013354.1-P | Field mustard | mitochondrion | 18.84 | 19.94 |
| TraesCS3B01G377200.1 | Wheat | mitochondrion, nucleus | 20.87 | 19.89 |
| KRH11062 | Soybean | plastid | 20.58 | 19.19 |
| CDY01560 | Canola | nucleus | 19.71 | 19.1 |
| AT4G18830.1 | Thale cress | mitochondrion, nucleus, plastid | 19.13 | 18.91 |
| Bra012575.1-P | Field mustard | nucleus | 19.42 | 18.11 |
| KRH21207 | Soybean | plastid | 21.45 | 17.87 |
| KRH59028 | Soybean | plastid | 20.58 | 17.36 |
| KRH42918 | Soybean | plastid | 20.29 | 16.95 |
| TraesCS1B01G284700.1 | Wheat | plastid | 11.01 | 16.81 |
| TraesCS1B01G310200.1 | Wheat | mitochondrion, plastid | 17.1 | 16.53 |
| TraesCS4B01G262000.1 | Wheat | mitochondrion | 12.75 | 15.94 |
| TraesCS3B01G408300.1 | Wheat | plastid | 10.43 | 15.93 |
| TraesCS1B01G193300.1 | Wheat | mitochondrion | 11.01 | 15.45 |
| Solyc02g072030.1.1 | Tomato | mitochondrion, nucleus, plastid | 16.52 | 15.12 |
| TraesCS3B01G178800.1 | Wheat | nucleus | 15.07 | 14.69 |
| PGSC0003DMT400073252 | Potato | nucleus | 17.1 | 14.39 |
| TraesCS6B01G267100.1 | Wheat | plastid | 11.3 | 13.09 |
| CDY62560 | Canola | nucleus | 17.39 | 12.71 |
| TraesCS3B01G255700.1 | Wheat | nucleus | 12.17 | 12.54 |
| TraesCS4B01G319700.1 | Wheat | plastid | 10.72 | 12.13 |
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 13.04 | 12.03 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G350500.1 | EnsemblPlantsGene:TraesCS1B01G350500 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF66 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr1B:-:581163050..581164290
Molecular Weight (calculated)
37229.2 Da
IEP (calculated)
12.065
GRAVY (calculated)
-0.738
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWGSRKQQH GTPQRALGLG GEIGERKGGG KSKAFSFSFL PLSWLSKLAT KPKRAPASTH EGRGGAGADA PPPFKSGLPE RAASPAKVAI APAGRLSSPS
101: PRRSPAVLRR LFAGNDNADA VAARGRHRPA AAVAAAEEVV PRRLSVGNDS ADAVAPRRHC RPRRHCSLGG DRDLQAPLGK HIPFSLAGSP AQPPPSAQTA
201: AAAAPSDTDG GGARLRRRHR GRRHRRSVSG GRRSSFSGKV TLRVKVRSPR RSAPELESLA VVRRTRDPQR AFRESMYEMI ASSGGTDARP EELERLLACY
301: LALNADEHHD CIVKVFRQVW FDHVNLPPPR RGRDREEHPG RHARP
101: PRRSPAVLRR LFAGNDNADA VAARGRHRPA AAVAAAEEVV PRRLSVGNDS ADAVAPRRHC RPRRHCSLGG DRDLQAPLGK HIPFSLAGSP AQPPPSAQTA
201: AAAAPSDTDG GGARLRRRHR GRRHRRSVSG GRRSSFSGKV TLRVKVRSPR RSAPELESLA VVRRTRDPQR AFRESMYEMI ASSGGTDARP EELERLLACY
301: LALNADEHHD CIVKVFRQVW FDHVNLPPPR RGRDREEHPG RHARP
001: MRNYKLRLSV MSPSEWFHKL KNMTKPRKKH SLPLYSINTT KKRKPSSESK SLPYSSTSYF FNRSRSRTSF ESRILQISPR NSLHNIQSKR KTVYKPSPPS
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK
Arabidopsis Description
OFP4Transcription repressor OFP4 [Source:UniProtKB/Swiss-Prot;Acc:F4HNU8]
SUBAcon: [mitochondrion,plastid,nucleus]
SUBAcon: [mitochondrion,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.