Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G338100.1 | Wheat | cytosol | 95.65 | 96.21 |
| TraesCS1B01G350500.1 | Wheat | cytosol, mitochondrion, nucleus | 91.01 | 91.01 |
| HORVU1Hr1G076490.1 | Barley | nucleus | 83.19 | 80.85 |
| EES19813 | Sorghum | nucleus | 51.59 | 53.13 |
| Os05t0517100-00 | Rice | mitochondrion | 48.41 | 52.85 |
| Zm00001d038714_P001 | Maize | nucleus | 47.54 | 52.06 |
| TraesCS3D01G289200.1 | Wheat | nucleus | 38.84 | 45.27 |
| GSMUA_Achr9P05640_001 | Banana | nucleus | 32.75 | 39.1 |
| GSMUA_Achr6P31770_001 | Banana | nucleus | 31.59 | 37.2 |
| VIT_10s0003g01750.t01 | Wine grape | nucleus | 14.49 | 25.64 |
| TraesCS2D01G105600.1 | Wheat | nucleus | 19.71 | 24.64 |
| TraesCS4D01G171100.1 | Wheat | nucleus, plastid | 20.29 | 22.95 |
| CDY09258 | Canola | mitochondrion | 19.42 | 20.94 |
| Bra020989.1-P | Field mustard | mitochondrion | 19.13 | 20.56 |
| CDX99420 | Canola | mitochondrion | 19.42 | 20.49 |
| TraesCS2D01G390300.1 | Wheat | mitochondrion | 15.07 | 20.39 |
| CDX78899 | Canola | mitochondrion | 18.84 | 19.94 |
| Bra013354.1-P | Field mustard | mitochondrion | 18.84 | 19.94 |
| KRH11062 | Soybean | plastid | 21.16 | 19.73 |
| CDY01560 | Canola | nucleus | 20.0 | 19.38 |
| TraesCS3D01G339100.1 | Wheat | nucleus | 20.58 | 19.35 |
| AT4G18830.1 | Thale cress | mitochondrion, nucleus, plastid | 19.13 | 18.91 |
| KRH21207 | Soybean | plastid | 22.32 | 18.6 |
| Bra012575.1-P | Field mustard | nucleus | 19.71 | 18.38 |
| KRH59028 | Soybean | plastid | 21.45 | 18.09 |
| KRH42918 | Soybean | plastid | 21.16 | 17.68 |
| TraesCS1D01G299500.1 | Wheat | nucleus | 18.55 | 17.2 |
| TraesCS1D01G275100.1 | Wheat | plastid | 11.01 | 16.59 |
| TraesCS4D01G316300.1 | Wheat | nucleus, plastid | 10.43 | 15.93 |
| TraesCS3D01G368500.1 | Wheat | plastid | 10.43 | 15.86 |
| TraesCS1D01G191500.1 | Wheat | mitochondrion | 11.3 | 15.85 |
| TraesCS4D01G262000.1 | Wheat | mitochondrion | 12.75 | 15.83 |
| Solyc02g072030.1.1 | Tomato | mitochondrion, nucleus, plastid | 16.81 | 15.38 |
| TraesCS3D01G159700.1 | Wheat | mitochondrion, nucleus | 15.07 | 14.81 |
| PGSC0003DMT400073252 | Potato | nucleus | 17.1 | 14.39 |
| TraesCS6D01G239400.1 | Wheat | plastid | 11.59 | 13.51 |
| TraesCS3D01G227100.1 | Wheat | nucleus | 12.75 | 13.25 |
| CDY62560 | Canola | nucleus | 17.68 | 12.92 |
| TraesCS2D01G394400.1 | Wheat | mitochondrion | 13.33 | 12.04 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G340300.1 | EnsemblPlantsGene:TraesCS1D01G340300 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF66 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr1D:-:430323359..430324396
Molecular Weight (calculated)
37251.2 Da
IEP (calculated)
12.116
GRAVY (calculated)
-0.736
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWGSRKQQH GTPSRASEQG ESGEHKGSGK SKAFPFSFSP LSWLSKLAAK PKRTPASTHE GRGAGASAAA AAPPFKSALP ERVSPAKVVI APAGRLSSPS
101: PRRSPAVLRR LFVGNDNAEA VAARGRHRPA AAVAAAEEVV PRRLSVGNDS ADAVAPRRHC RPRRHCSVGG DRDLQAPLGK HIPFSLAGSP AQPRPPPQAA
201: AAAAPSDTDG GGARLRRRHR GRRHWRSVSG GRRSSFSGKV TLRVKVRSPR RSAPELESLA VVRRTRDPQR AFRESMSEMI ASSGGTDARP EELERLLACY
301: LALNADEHHD CIVKVFRQVW FDHVNLPPPR RGRGREEHPG RHARP
101: PRRSPAVLRR LFVGNDNAEA VAARGRHRPA AAVAAAEEVV PRRLSVGNDS ADAVAPRRHC RPRRHCSVGG DRDLQAPLGK HIPFSLAGSP AQPRPPPQAA
201: AAAAPSDTDG GGARLRRRHR GRRHWRSVSG GRRSSFSGKV TLRVKVRSPR RSAPELESLA VVRRTRDPQR AFRESMSEMI ASSGGTDARP EELERLLACY
301: LALNADEHHD CIVKVFRQVW FDHVNLPPPR RGRGREEHPG RHARP
001: MRNYKLRLSV MSPSEWFHKL KNMTKPRKKH SLPLYSINTT KKRKPSSESK SLPYSSTSYF FNRSRSRTSF ESRILQISPR NSLHNIQSKR KTVYKPSPPS
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK
Arabidopsis Description
OFP4Transcription repressor OFP4 [Source:UniProtKB/Swiss-Prot;Acc:F4HNU8]
SUBAcon: [mitochondrion,plastid,nucleus]
SUBAcon: [mitochondrion,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.