Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G492400.1 | Wheat | nucleus | 93.36 | 90.56 |
| HORVU4Hr1G083150.1 | Barley | plastid | 79.2 | 70.75 |
| TraesCS4B01G319700.1 | Wheat | plastid | 89.82 | 66.56 |
| EER92948 | Sorghum | plastid | 58.41 | 51.76 |
| Zm00001d027453_P001 | Maize | plastid | 55.75 | 51.01 |
| TraesCS1D01G191500.1 | Wheat | mitochondrion | 40.71 | 37.4 |
| Os03t0126450-00 | Rice | nucleus | 53.98 | 36.2 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 30.97 | 33.82 |
| GSMUA_Achr11P... | Banana | plastid | 23.89 | 31.4 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 23.89 | 31.03 |
| Solyc11g068780.1.1 | Tomato | cytosol | 17.7 | 29.2 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 23.45 | 27.04 |
| PGSC0003DMT400050511 | Potato | cytosol | 16.37 | 26.62 |
| AT3G52525.1 | Thale cress | plastid | 18.58 | 26.42 |
| TraesCS6D01G239400.1 | Wheat | plastid | 30.53 | 23.31 |
| KRH32810 | Soybean | mitochondrion | 18.14 | 23.16 |
| KRH72226 | Soybean | mitochondrion | 17.7 | 22.99 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 18.58 | 22.58 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 17.7 | 22.47 |
| TraesCS3D01G368500.1 | Wheat | plastid | 22.57 | 22.47 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 17.7 | 21.51 |
| Bra017266.1-P | Field mustard | nucleus | 17.7 | 21.51 |
| CDY43753 | Canola | nucleus | 17.7 | 21.51 |
| CDX75076 | Canola | nucleus | 17.7 | 21.51 |
| TraesCS2D01G394400.1 | Wheat | mitochondrion | 36.28 | 21.47 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 17.26 | 21.31 |
| KRH67981 | Soybean | mitochondrion | 17.7 | 21.05 |
| KRH26670 | Soybean | mitochondrion | 17.26 | 20.97 |
| KRG96237 | Soybean | mitochondrion | 17.7 | 20.94 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 16.81 | 20.88 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 16.81 | 20.65 |
| KRH22646 | Soybean | mitochondrion, nucleus | 16.81 | 20.65 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 17.26 | 20.63 |
| KRH30374 | Soybean | nucleus, plastid | 16.81 | 19.29 |
| TraesCS1D01G275100.1 | Wheat | plastid | 19.47 | 19.21 |
| KRH25295 | Soybean | nucleus, plastid | 16.37 | 18.97 |
| TraesCS4D01G262000.1 | Wheat | mitochondrion | 18.14 | 14.75 |
| TraesCS2D01G390300.1 | Wheat | mitochondrion | 15.49 | 13.73 |
| TraesCS3D01G289200.1 | Wheat | nucleus | 17.7 | 13.51 |
| TraesCS3D01G227100.1 | Wheat | nucleus | 19.47 | 13.25 |
| TraesCS2D01G105600.1 | Wheat | nucleus | 15.49 | 12.68 |
| TraesCS3D01G159700.1 | Wheat | mitochondrion, nucleus | 19.47 | 12.54 |
| TraesCS4D01G171100.1 | Wheat | nucleus, plastid | 16.37 | 12.13 |
| TraesCS3D01G339100.1 | Wheat | nucleus | 19.03 | 11.72 |
| TraesCS1D01G299500.1 | Wheat | nucleus | 17.26 | 10.48 |
| TraesCS1D01G340300.1 | Wheat | nucleus | 15.93 | 10.43 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G316300.1 | EnsemblPlantsGene:TraesCS4D01G316300 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF34 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr4D:-:481447347..481448355
Molecular Weight (calculated)
23780.3 Da
IEP (calculated)
10.470
GRAVY (calculated)
-0.454
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MKATTPRGGG VETAKPKKRK KAGAGGFIFG CGGSRSVAVV ADNLSTMALA KSSSSSSAGP TAEPAPAAKP KAPAYHDAEG APSVDALLGQ LRELERGVRA
101: LGVRAREEDG VAQACRCSAR PPRHRQGGRG RLEEESVAVV TETEDPLGEF RRSMAEMVVE NGITGGAELR ELLQRFLSLN AARHHHLILR AFADVWEELF
201: AGDPTKKLKQ KRPAVSPAGH GARASS
101: LGVRAREEDG VAQACRCSAR PPRHRQGGRG RLEEESVAVV TETEDPLGEF RRSMAEMVVE NGITGGAELR ELLQRFLSLN AARHHHLILR AFADVWEELF
201: AGDPTKKLKQ KRPAVSPAGH GARASS
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.