Factsheet for GSMUA_Achr1P03740_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT3G52525.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	45.98	46.51
GSMUA_Achr8P12190_001	Banana	plastid	47.13	41.84
GSMUA_Achr5P20250_001	Banana	plastid	42.53	35.75
Zm00001d029718_P001	Maize	mitochondrion	45.4	30.38
Os02t0679700-01	Rice	plastid	48.85	30.25
TraesCS1B01G193300.1	Wheat	mitochondrion	42.53	30.08
TraesCS1D01G191500.1	Wheat	mitochondrion	42.53	30.08
HORVU1Hr1G049440.1	Barley	mitochondrion	42.53	29.72
TraesCS1A01G185400.1	Wheat	mitochondrion	41.95	29.67
Os10t0532600-01	Rice	mitochondrion	44.25	29.28
Solyc11g068780.1.1	Tomato	cytosol	22.99	29.2
TraesCS6D01G239400.1	Wheat	plastid	49.43	29.05
TraesCS6A01G258000.1	Wheat	plastid	48.28	28.77
TraesCS6B01G267100.1	Wheat	plastid	48.85	28.52
PGSC0003DMT400050511	Potato	cytosol	22.41	28.06
HORVU6Hr1G065900.1	Barley	mitochondrion, plastid	47.7	27.95
EER94592	Sorghum	mitochondrion	42.53	26.24
Zm00001d047346_P001	Maize	mitochondrion	40.8	25.82
Zm00001d017606_P001	Maize	plastid	41.95	25.0
OQU85631	Sorghum	plastid	44.25	25.0
Zm00001d027453_P001	Maize	plastid	35.06	24.7
AT3G52525.1	Thale cress	plastid	22.41	24.53
KRH26670	Soybean	mitochondrion	25.86	24.19
KRH22646	Soybean	mitochondrion, nucleus	25.29	23.91
TraesCS4D01G316300.1	Wheat	nucleus, plastid	31.03	23.89
TraesCS5A01G492400.1	Wheat	nucleus	31.61	23.61
Solyc10g082050.1.1	Tomato	mitochondrion	24.14	23.6
Os04t0577700-01	Rice	nucleus	49.43	23.43
EER92948	Sorghum	plastid	33.91	23.14
KRH72226	Soybean	mitochondrion	22.99	22.99
TraesCS2A01G396600.1	Wheat	mitochondrion, plastid	49.43	22.69
GSMUA_Achr6P19470_001	Banana	nucleus	24.14	22.58
TraesCS2D01G394400.1	Wheat	mitochondrion	49.43	22.51
TraesCS2B01G415000.1	Wheat	mitochondrion	48.28	22.46
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	23.56	22.04
KRH32810	Soybean	mitochondrion	22.41	22.03
HORVU4Hr1G083150.1	Barley	plastid	31.61	21.74
Zm00001d026061_P001	Maize	cytosol, mitochondrion, nucleus, plastid	47.7	21.67
KRH67981	Soybean	mitochondrion	23.56	21.58
CDX75076	Canola	nucleus	22.99	21.51
Bra005303.1-P	Field mustard	mitochondrion, plastid	22.99	21.51
KRG96237	Soybean	mitochondrion	23.56	21.47
AT2G36026.1	Thale cress	nucleus, plastid	22.41	21.31
PGSC0003DMT400072347	Potato	mitochondrion, plastid	22.99	21.16
Zm00001d002594_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.28	21.16
Solyc01g007800.2.1	Tomato	mitochondrion	21.84	20.88
KRH30374	Soybean	nucleus, plastid	23.56	20.81
EES11304	Sorghum	plastid	48.85	20.78
PGSC0003DMT400042334	Potato	mitochondrion	21.84	20.65
Os01t0831800-00	Rice	plastid	32.76	20.58
KRH25295	Soybean	nucleus, plastid	22.99	20.51
Bra017266.1-P	Field mustard	nucleus	21.84	20.43
CDY43753	Canola	nucleus	21.84	20.43
GSMUA_Achr9P02660_001	Banana	mitochondrion	22.99	20.2
GSMUA_Achr6P18350_001	Banana	mitochondrion	24.14	19.44
HORVU2Hr1G094240.1	Barley	cytosol, mitochondrion, plastid	38.51	18.66
Os03t0126450-00	Rice	nucleus	34.48	17.8
TraesCS4B01G319700.1	Wheat	plastid	30.46	17.38
GSMUA_Achr11P...	Banana	nucleus	15.52	17.2
GSMUA_AchrUn_...	Banana	mitochondrion	21.84	17.12
GSMUA_Achr2P19920_001	Banana	nucleus	17.82	16.15
GSMUA_Achr4P14010_001	Banana	nucleus	17.82	14.42
GSMUA_Achr9P05500_001	Banana	nucleus	22.41	11.93
GSMUA_Achr1P04990_001	Banana	nucleus	20.11	11.78
GSMUA_Achr7P25950_001	Banana	mitochondrion	21.84	11.59
GSMUA_Achr6P31770_001	Banana	nucleus	17.82	10.58
GSMUA_Achr8P15960_001	Banana	nucleus	21.26	10.42
GSMUA_Achr9P05640_001	Banana	nucleus	16.09	9.69
GSMUA_Achr5P29630_001	Banana	nucleus	17.24	9.65
GSMUA_Achr6P25230_001	Banana	nucleus	15.52	9.38
GSMUA_Achr3P09850_001	Banana	mitochondrion	14.94	8.2
GSMUA_AchrUn_...	Banana	mitochondrion	16.09	7.76

Protein Annotations

EnsemblPlants:GSMUA_Achr1P03740_001	EnsemblPlants:GSMUA_Achr1T03740_001	EnsemblPlantsGene:GSMUA_Achr1G03740_001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C
PANTHER:PTHR33057	PANTHER:PTHR33057:SF6	PFAM:PF04844	PFscan:PS51754	SEG:seg	UniParc:UPI00029548EC
UniProt:M0RWT2	MapMan:15.5.37	:	:	:	:

Description

DUF623 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G03740_001]

Coordinates

chr1:-:3096880..3097560

Molecular Weight (calculated)

19274.8 Da

IEP (calculated)

6.357

GRAVY (calculated)

-0.372

Length

174 amino acids

Sequence
(BLAST)

001: MSTSATQKRS SSGTFLGLGC GCKDSKSVSV SVSSSSVDAK SVTPAPLTRR ARELSSADTM TLSSPSTFSY GEEEVKMESS ASTPSLFGLL RQLNELEQDV
101: TSSMLQMIID KEIVDGEELR ELLRRFLALN SPRHHDTILR AFAEIWEEVF AGYETTPDLL HHRNRTRLPV PRHL

Best Arabidopsis Sequence Match ( AT2G36026.1 )
(BLAST)

001: MTTGKSKKKK MVLKAVSVVD IGCGNCKFPS LSSFFNPSPK KPRLYSSNYG HCHSSTPTTA SSSSAVPSTS HWFSDTSSSS ATPSAAAVAV EKDSDDPYLD
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK

Arabidopsis Description

Ovate family protein [Source:UniProtKB/TrEMBL;Acc:B3H6R4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.