Factsheet for GSMUA_Achr5P29630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	60.13	51.8
GSMUA_Achr6P25230_001	Banana	nucleus	40.51	43.75
GSMUA_Achr3P09850_001	Banana	mitochondrion	39.55	38.8
GSMUA_Achr11P...	Banana	nucleus	13.83	27.39
GSMUA_Achr9P02660_001	Banana	mitochondrion	16.4	25.76
GSMUA_Achr6P31770_001	Banana	nucleus	23.79	25.26
GSMUA_Achr9P05640_001	Banana	nucleus	22.19	23.88
GSMUA_Achr6P18350_001	Banana	mitochondrion	15.76	22.69
GSMUA_Achr6P19470_001	Banana	nucleus	12.54	20.97
GSMUA_Achr2P19920_001	Banana	nucleus	12.54	20.31
GSMUA_AchrUn_...	Banana	mitochondrion	14.15	19.82
GSMUA_Achr4P14010_001	Banana	nucleus	12.86	18.6
GSMUA_Achr1P04990_001	Banana	nucleus	17.36	18.18
GSMUA_Achr9P05500_001	Banana	nucleus	18.65	17.74
GSMUA_Achr1P03740_001	Banana	plastid	9.65	17.24
GSMUA_Achr5P20250_001	Banana	plastid	11.25	16.91
GSMUA_Achr11P...	Banana	plastid	9.32	16.86
GSMUA_Achr8P12190_001	Banana	plastid	9.97	15.82
GSMUA_Achr7P25950_001	Banana	mitochondrion	16.08	15.24
GSMUA_Achr8P15960_001	Banana	nucleus	16.72	14.65

Protein Annotations

MapMan:15.5.37	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
EnsemblPlantsGene:GSMUA_Achr5G29630_001	EnsemblPlants:GSMUA_Achr5P29630_001	EnsemblPlants:GSMUA_Achr5T29630_001	InterPro:IPR006458	UniProt:M0T2T7	InterPro:Ovate
InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF22
TIGRFAMs:TIGR01568	UniParc:UPI00029659AA	SEG:seg	:	:	:

Description

Putative DUF623 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G29630_001]

Coordinates

chr5:+:29261090..29262271

Molecular Weight (calculated)

34790.0 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.609

Length

311 amino acids

Sequence
(BLAST)

001: MGNYRFRFSD MMPSAWFYKL KDMSHRGNKN YGAPHFTGSG LGVPSKIAAA TTSKPFPPAE TDLLPNRASC YYPNRTEAER FSFSPTHSKA VDTHFPDNNN
101: LASWQHSGSC RFRSSATDII IDTDTNNSIT GKLELVDEFD SVSELKLRPI ITKPGMKEPE AAKSEEDDVD DKVGIGHNVS LGKAQNKVPV KKSSPGLHRL
201: RMRANSPRLA SKKVQAHRSR RCTVSTTTSA TATKQRMGLS ESFAVVKSSS DPQRDFRDSM LEMIVENNIR ASKDLEELLA CYLSLNSDEY HDVIVKAFQQ
301: IWFDLCQSIK L

Best Arabidopsis Sequence Match ( AT5G01840.1 )
(BLAST)

001: MGNNYRFKLS ELIPNAWFYK LRDMSKSKKK NLQSQPNSTT SKKKHHAVPT PTSTTPLSPR PPRRPSHSSK APPSHPPRKS SGNRLRHRAT VDSKSSTTSG
101: DSTTTETGSF SPDFRSDQVL LPDESLTGSW HSPCSSKLSK TATFTPPPEL ELRPIITKTA ATARKTAVNS PAGVRLRMRS PRISVSSSAR RSGSSARRSR
201: AVVKASVDPK RDFKESMEEM IAENKIRATK DLEELLACYL CLNSDEYHAI IINVFKQIWL DLNLPPPHSK

Arabidopsis Description

OFP1Transcription repressor OFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.