Factsheet for GSMUA_Achr6P25230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P29630_001	Banana	nucleus	43.75	40.51
GSMUA_Achr3P09850_001	Banana	mitochondrion	40.97	37.22
GSMUA_AchrUn_...	Banana	mitochondrion	44.1	35.18
GSMUA_Achr11P...	Banana	nucleus	15.28	28.03
GSMUA_Achr9P02660_001	Banana	mitochondrion	17.01	24.75
GSMUA_Achr6P18350_001	Banana	mitochondrion	18.4	24.54
GSMUA_Achr9P05640_001	Banana	nucleus	24.31	24.22
GSMUA_Achr6P31770_001	Banana	nucleus	23.96	23.55
GSMUA_AchrUn_...	Banana	mitochondrion	15.97	20.72
GSMUA_Achr2P19920_001	Banana	nucleus	13.54	20.31
GSMUA_Achr6P19470_001	Banana	nucleus	12.5	19.35
GSMUA_Achr4P14010_001	Banana	nucleus	14.24	19.07
GSMUA_Achr9P05500_001	Banana	nucleus	20.49	18.04
GSMUA_Achr5P20250_001	Banana	plastid	12.85	17.87
GSMUA_Achr1P04990_001	Banana	nucleus	18.4	17.85
GSMUA_Achr11P...	Banana	plastid	10.07	16.86
GSMUA_Achr1P03740_001	Banana	plastid	9.38	15.52
GSMUA_Achr8P12190_001	Banana	plastid	10.42	15.31
GSMUA_Achr8P15960_001	Banana	nucleus	18.4	14.93
GSMUA_Achr7P25950_001	Banana	mitochondrion	16.67	14.63

Protein Annotations

MapMan:15.5.37	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
EnsemblPlantsGene:GSMUA_Achr6G25230_001	EnsemblPlants:GSMUA_Achr6P25230_001	EnsemblPlants:GSMUA_Achr6T25230_001	InterPro:IPR006458	UniProt:M0TA19	InterPro:Ovate
InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF22
TIGRFAMs:TIGR01568	UniParc:UPI000296E739	SEG:seg	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_58.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G25230_001]

Coordinates

chr6:-:26314000..26315034

Molecular Weight (calculated)

32398.6 Da

IEP (calculated)

10.744

GRAVY (calculated)

-0.735

Length

288 amino acids

Sequence
(BLAST)

001: MGKNRFKLSD MLPYAWFYKL KFMSLRGRRD HSMSQSTKRS QPAPTPLPPP QTRILPSRAS CYVSSRSQEE KSIEPPRKSK RRSRRETVAD PSDNIKLVTS
101: SVSAGCSCRV WKTESISVFP ARAAAPESPP HLRDPYVDRD HGYPKDESDP TKFQDKTVVG KVVSHRNASA KRSSPGLHRL RTRGNSPRLA CKKLRPRCNR
201: RSGTSTAPAA MQKGKGLSGS FAVVKSSSDP QRDFRDSMVE MIVENNIRAS KDLEELLACY LSLNSDEYHG VIVAVFQQIW FELTSLNL

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.