Factsheet for GSMUA_Achr3P09850_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr1P03680_001
GSMUA_Achr1P06400_001
GSMUA_Achr2P04310_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P04480_001
GSMUA_Achr4P12180_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr9P18740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06920.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT1G06920.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT1G06920.1	GSMUA_Achr1P03680_001	AT5G41410.1	15781858
AT1G06920.1	GSMUA_Achr1P06400_001	AT5G41410.1	15781858
AT1G06920.1	GSMUA_Achr2P04310_001	AT5G41410.1	15781858
AT1G06920.1	GSMUA_Achr4P04480_001	AT5G41410.1	15781858
AT1G06920.1	GSMUA_Achr4P12180_001	AT5G41410.1	15781858
AT1G06920.1	GSMUA_Achr9P18740_001	AT5G41410.1	15781858
AT2G30400.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT2G30400.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT2G30400.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT5G58360.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32706	Canola	cytosol	10.73	68.0
CDY02814	Canola	cytosol	10.09	64.0
GSMUA_Achr6P25230_001	Banana	nucleus	37.22	40.97
GSMUA_Achr5P29630_001	Banana	nucleus	38.8	39.55
GSMUA_AchrUn_...	Banana	mitochondrion	39.12	34.35
KRG98156	Soybean	nucleus	40.06	32.99
KRH72818	Soybean	nucleus	39.12	32.38
KRH30114	Soybean	nucleus	37.22	32.24
KRH17171	Soybean	nucleus, plastid	36.59	31.02
CDY32990	Canola	nucleus	27.13	30.07
CDY43860	Canola	nucleus	26.81	29.31
Bra031546.1-P	Field mustard	mitochondrion, nucleus, plastid	27.76	29.24
CDY06241	Canola	mitochondrion	27.44	28.9
CDY09945	Canola	nucleus, plastid	26.81	28.24
CDY67505	Canola	nucleus, plastid	26.81	28.24
CDX84837	Canola	nucleus	21.14	27.92
CDX97830	Canola	nucleus	27.44	27.44
AT5G58360.1	Thale cress	nucleus	25.55	27.36
CDY02063	Canola	nucleus	26.81	27.33
Bra018316.1-P	Field mustard	nucleus	27.13	27.22
CDY10735	Canola	nucleus	26.5	27.18
CDY29674	Canola	nucleus	27.76	27.16
AT1G06920.1	Thale cress	mitochondrion, nucleus, plastid	26.81	26.98
Bra021632.1-P	Field mustard	nucleus	27.44	26.85
PGSC0003DMT400078126	Potato	nucleus	29.65	26.78
Solyc06g082460.1.1	Tomato	nucleus	29.02	26.21
GSMUA_Achr11P...	Banana	nucleus	12.93	26.11
Bra022796.1-P	Field mustard	nucleus	24.92	25.65
Bra002657.1-P	Field mustard	nucleus	27.44	25.44
AT2G30400.1	Thale cress	nucleus	25.55	25.31
CDY62219	Canola	nucleus	24.61	25.24
GSMUA_Achr6P31770_001	Banana	nucleus	20.19	21.84
GSMUA_Achr9P05640_001	Banana	nucleus	19.24	21.11
GSMUA_Achr2P19920_001	Banana	nucleus	12.62	20.83
GSMUA_Achr9P02660_001	Banana	mitochondrion	12.62	20.2
GSMUA_Achr4P14010_001	Banana	nucleus	13.56	20.0
GSMUA_Achr6P19470_001	Banana	nucleus	11.67	19.89
GSMUA_Achr6P18350_001	Banana	mitochondrion	13.25	19.44
GSMUA_AchrUn_...	Banana	mitochondrion	12.3	17.57
GSMUA_Achr5P20250_001	Banana	plastid	11.36	17.39
GSMUA_Achr9P05500_001	Banana	nucleus	17.67	17.13
GSMUA_Achr1P04990_001	Banana	nucleus	15.77	16.84
GSMUA_Achr8P12190_001	Banana	plastid	9.46	15.31
GSMUA_Achr7P25950_001	Banana	mitochondrion	15.77	15.24
GSMUA_Achr11P...	Banana	plastid	8.2	15.12
GSMUA_Achr1P03740_001	Banana	plastid	8.2	14.94
GSMUA_Achr8P15960_001	Banana	nucleus	16.72	14.93

Protein Annotations

MapMan:15.5.37	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
EnsemblPlantsGene:GSMUA_Achr3G09850_001	EnsemblPlants:GSMUA_Achr3P09850_001	EnsemblPlants:GSMUA_Achr3T09850_001	InterPro:IPR006458	UniProt:M0SDA2	InterPro:Ovate
InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF22
TIGRFAMs:TIGR01568	UniParc:UPI000294C129	SEG:seg	:	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G09850_001]

Coordinates

chr3:-:7159880..7160833

Molecular Weight (calculated)

35660.7 Da

IEP (calculated)

10.342

GRAVY (calculated)

-0.654

Length

317 amino acids

Sequence
(BLAST)

001: MGNYRFRLSD LMSSSWFYKL KDVGRANGSR RVQHSMKRFQ SSASATASAA SLPPFQPPKE HDYLPNRASY YTPSKERAEK LPRSPVNPKA SDTRFPGEPP
101: QKSKRQTRRR TATKPCADVV SSAVSASCGC RRTAAPVSLP IYGDECDPCE PTNPSVYDHR NADMDLVVSE LKLPPILTKP VKKEVREPAL HETGAFTDHS
201: KAATRRSVSG IHGIKVRQVS PRVGSRKVQA CRKPKVATTQ QKRRPVSQSL VMIKSSSNPS RDFTESMVEM IVENNIREAK DLEELLACYL SLNSKEYHEV
301: IIKVFEHIWF VLTDIRM

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.