Factsheet for PGSC0003DMT400078126

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58360.1	PGSC0003DMT400058528	AT1G62990.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082460.1.1	Tomato	nucleus	92.59	92.59
CDY02814	Canola	cytosol	9.69	68.0
CDY32706	Canola	cytosol	9.4	66.0
KRG98156	Soybean	nucleus	44.16	40.26
KRH72818	Soybean	nucleus	43.3	39.69
PGSC0003DMT400011286	Potato	nucleus	31.91	39.44
KRH30114	Soybean	nucleus	40.74	39.07
KRH17171	Soybean	nucleus, plastid	41.6	39.04
CDY43860	Canola	nucleus	29.63	35.86
CDY32990	Canola	nucleus	28.49	34.97
AT5G58360.1	Thale cress	nucleus	29.06	34.46
Bra002657.1-P	Field mustard	nucleus	29.91	30.7
PGSC0003DMT400050511	Potato	cytosol	11.97	30.22
GSMUA_Achr3P09850_001	Banana	mitochondrion	26.78	29.65
PGSC0003DMT400000838	Potato	nucleus	18.23	22.86
PGSC0003DMT400042334	Potato	mitochondrion	11.68	22.28
PGSC0003DMT400095058	Potato	plastid	13.68	20.25
PGSC0003DMT400072347	Potato	mitochondrion, plastid	10.54	19.58
PGSC0003DMT400033048	Potato	mitochondrion, nucleus, plastid	17.66	17.71
PGSC0003DMT400073252	Potato	nucleus	19.37	16.59
PGSC0003DMT400045857	Potato	mitochondrion	17.38	15.37
PGSC0003DMT400037629	Potato	plastid	16.52	13.74

Protein Annotations

EntrezGene:102602169	MapMan:15.5.37	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045892	InterPro:IPR006458	UniProt:M1CZF8	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844
PFAM:PF13724	EnsemblPlantsGene:PGSC0003DMG400030384	PGSC:PGSC0003DMG400030384	EnsemblPlants:PGSC0003DMT400078126	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF38	TIGRFAMs:TIGR01568	UniParc:UPI000294E7C8	RefSeq:XP_006350877.1	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030384]

Coordinates

chr6:+:57574904..57576476

Molecular Weight (calculated)

39898.3 Da

IEP (calculated)

9.932

GRAVY (calculated)

-0.862

Length

351 amino acids

Sequence
(BLAST)

001: MGNHKFKFSD MMPNTWFYKL KDMSKTKNHK SPFSSSSTNK SQYSQPRSSF SYTRRSIRVD KIYNSHSYSF LDQPRRSSSS SSKKKSKRKT IYKPSPKHIP
101: SSVSNYVSVS NKLKSSSSVY STEDDKFPEL DFLNSPSSEF DSVESQSFNE LASTWPNSCS CHFTSSATDI IIDMNDKAHS NEFHNLNTEY AEISDIDQLP
201: PIITKTSNSI KNINQDENVK AQREQEAKNR VSSPVSRKHY SSSSGVKLRT NSTKVASKRN SVSSSKRRSK AKKESCSTST GTSFAIVKAS IDPEKDFRES
301: MIEMVVENNI RASKDLENLL ACYLSLNSNE YHDLIIKAFE QIWFNLSDLH L

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.