Factsheet for PGSC0003DMT400058528

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400012712
PGSC0003DMT400032122
PGSC0003DMT400040351
PGSC0003DMT400042334
PGSC0003DMT400043083
PGSC0003DMT400049768
PGSC0003DMT400058528
PGSC0003DMT400063189
PGSC0003DMT400072347
PGSC0003DMT400076995
PGSC0003DMT400078126

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62990.1	PGSC0003DMT400043083	AT1G62360.1	15781858
AT1G62990.1	PGSC0003DMT400058528	AT1G62990.1	15781858
AT1G62990.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT1G62990.1	PGSC0003DMT400042334	AT3G52525.1	15781858
AT1G62990.1	PGSC0003DMT400072347	AT3G52525.1	15781858
AT1G62990.1	PGSC0003DMT400049768	AT4G02590.1	21798944
AT1G62990.1	PGSC0003DMT400012712	AT4G08150.1	15781858
AT1G62990.1	PGSC0003DMT400012712	AT4G08150.1	21798944
AT1G62990.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT1G62990.1	PGSC0003DMT400076995	AT4G32980.1	15781858
AT1G62990.1	PGSC0003DMT400040351	AT5G11060.1	15781858
AT1G62990.1	PGSC0003DMT400032122	AT5G41410.1	11701881
AT1G62990.1	PGSC0003DMT400078126	AT5G58360.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080120.2.1	Tomato	nucleus	96.79	97.42
KRH27981	Soybean	nucleus	77.56	86.74
KRH77464	Soybean	nucleus	77.56	86.12
VIT_02s0025g04630.t01	Wine grape	nucleus	79.81	85.57
KRH57265	Soybean	nucleus	77.24	82.25
KRH03996	Soybean	nucleus	76.28	81.51
AT1G62990.1	Thale cress	nucleus	75.64	81.1
Bra036636.1-P	Field mustard	nucleus	75.96	80.61
CDY66559	Canola	nucleus	75.96	80.61
CDY64892	Canola	nucleus	75.64	80.27
CDY45968	Canola	nucleus	74.04	78.84
Bra027006.1-P	Field mustard	nucleus	73.72	77.97
CDX93852	Canola	nucleus	54.81	77.03
GSMUA_Achr1P03660_001	Banana	nucleus	70.83	75.94
Os03t0123500-02	Rice	nucleus	69.23	68.79
Zm00001d027431_P002	Maize	nucleus	67.95	68.39
TraesCS5A01G515000.1	Wheat	nucleus	67.31	67.31
TraesCS4B01G346100.1	Wheat	nucleus	67.31	67.31
TraesCS4D01G341000.1	Wheat	nucleus	66.99	67.2
HORVU4Hr1G084680.1	Barley	nucleus	67.63	66.98
Zm00001d048471_P001	Maize	nucleus	67.95	66.67
KXG40306	Sorghum	nucleus	68.91	66.56
PGSC0003DMT400040351	Potato	nucleus	61.54	52.6
PGSC0003DMT400020407	Potato	nucleus	53.21	48.82
PGSC0003DMT400078990	Potato	nucleus	59.62	44.82
PGSC0003DMT400087440	Potato	nucleus	13.78	34.13
PGSC0003DMT400007159	Potato	nucleus	26.92	26.09
PGSC0003DMT400012712	Potato	nucleus	25.96	22.5
PGSC0003DMT400035095	Potato	nucleus	24.68	22.38
PGSC0003DMT400043083	Potato	nucleus	22.76	20.7
PGSC0003DMT400046618	Potato	nucleus	7.69	14.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
UniProt:M1C2T6	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	EnsemblPlantsGene:PGSC0003DMG400022736	PGSC:PGSC0003DMG400022736
EnsemblPlants:PGSC0003DMT400058528	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF74	SMART:SM00389
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000296C83A	SEG:seg	:

Description

Homeobox 2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022736]

Coordinates

chr8:+:53818846..53823778

Molecular Weight (calculated)

35604.1 Da

IEP (calculated)

6.840

GRAVY (calculated)

-0.748

Length

312 amino acids

Sequence
(BLAST)

001: MQQEQRGLGL MGSSSTTGLG GGDISSMMIS SEDHHNRNLN HQNQLKGEIA THPLYEQLLS AHVACLRVAT PIDQLPLIDA QLSQSHHLLR SYASSQQQQQ
101: QQHHSLSHHE RQELDNFLAQ YLLVLCSFKE QLQQHVRVHA VEAVMACREI EQNLQLLTGA TLGEGTGATM SDDEDELQMD FSLDVSGGDA HDLMGMGFGL
201: PTESERSLME RVRQELKIEL KQGFRSRIED VREEILRKRR AGKLPGDTTT VLKNWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS
301: QSVTSLKSKR KR

Best Arabidopsis Sequence Match ( AT1G62990.1 )
(BLAST)

001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H

Arabidopsis Description

KNAT7Homeobox protein knotted-1-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.