Factsheet for VIT_02s0025g04630.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00200.t01
VIT_02s0025g04630.t01
VIT_03s0038g00050.t01
VIT_04s0008g00880.t01
VIT_04s0008g06130.t01
VIT_06s0004g07910.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_07s0141g00220.t01
VIT_08s0007g02550.t01
VIT_10s0116g00190.t01
VIT_16s0022g00510.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62990.1	VIT_10s0116g00190.t01	AT1G62360.1	15781858
AT1G62990.1	VIT_02s0025g04630.t01	AT1G62990.1	15781858
AT1G62990.1	VIT_03s0038g00050.t01	AT2G16400.1	15781858
AT1G62990.1	VIT_03s0038g00050.t01	AT2G16400.1	21798944
AT1G62990.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT1G62990.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT1G62990.1	VIT_08s0007g02550.t01	AT3G52525.1	15781858
AT1G62990.1	VIT_07s0141g00220.t01	AT4G02590.1	21798944
AT1G62990.1	VIT_18s0001g08380.t01	AT4G08150.1	15781858
AT1G62990.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT1G62990.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT1G62990.1	VIT_04s0008g06130.t01	AT4G32040.1	15781858
AT1G62990.1	VIT_04s0008g00880.t01	AT4G32980.1	15781858
AT1G62990.1	VIT_06s0004g07910.t01	AT5G01840.1	15781858
AT1G62990.1	VIT_02s0025g00200.t01	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27981	Soybean	nucleus	85.57	89.25
KRH77464	Soybean	nucleus	84.88	87.9
KRH03996	Soybean	nucleus	83.85	83.56
KRH57265	Soybean	nucleus	83.85	83.28
Solyc08g080120.2.1	Tomato	nucleus	85.22	80.0
PGSC0003DMT400058528	Potato	nucleus	85.57	79.81
AT1G62990.1	Thale cress	nucleus	79.38	79.38
Bra036636.1-P	Field mustard	nucleus	80.07	79.25
CDY66559	Canola	nucleus	80.07	79.25
CDY64892	Canola	nucleus	79.73	78.91
CDY45968	Canola	nucleus	77.66	77.13
GSMUA_Achr1P03660_001	Banana	nucleus	76.63	76.63
Bra027006.1-P	Field mustard	nucleus	77.66	76.61
CDX93852	Canola	nucleus	58.42	76.58
Zm00001d027431_P002	Maize	nucleus	74.23	69.68
Os03t0123500-02	Rice	nucleus	74.23	68.79
Zm00001d048471_P001	Maize	nucleus	74.91	68.55
TraesCS4B01G346100.1	Wheat	nucleus	73.2	68.27
TraesCS5A01G515000.1	Wheat	nucleus	73.2	68.27
HORVU4Hr1G084680.1	Barley	nucleus	73.54	67.94
TraesCS4D01G341000.1	Wheat	nucleus	72.16	67.52
KXG40306	Sorghum	nucleus	74.91	67.49
VIT_04s0008g06130.t01	Wine grape	nucleus	67.7	46.14
VIT_11s0118g00800.t01	Wine grape	nucleus	64.26	43.49
VIT_14s0060g01180.t01	Wine grape	nucleus	29.55	27.74
VIT_01s0127g00210.t01	Wine grape	nucleus	28.52	26.1
VIT_17s0000g08710.t01	Wine grape	nucleus	27.84	25.39
VIT_18s0001g08380.t01	Wine grape	nucleus	28.52	22.43
VIT_12s0059g01190.t01	Wine grape	nucleus	26.12	21.05
VIT_10s0116g00190.t01	Wine grape	nucleus	25.09	20.86
VIT_15s0021g01750.t01	Wine grape	nucleus	13.4	17.03

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259923	wikigene:100259923	MapMan:15.5.3.4	ProteinID:CBI34768	ProteinID:CBI34768.3
UniProt:D7TW93	InterPro:ELK_dom	EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
EntrezGene:LOC100259923	wikigene:LOC100259923	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF74	SMART:SM00389	SMART:SM01255	SMART:SM01256
SUPFAM:SSF46689	TIGR:TC62041	UniParc:UPI00015CD105	ArrayExpress:VIT_02s0025g04630	EnsemblPlantsGene:VIT_02s0025g04630	EnsemblPlants:VIT_02s0025g04630.t01
unigene:Vvi.24617	RefSeq:XP_002282231	RefSeq:XP_002282231.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:4164370..4172128

Molecular Weight (calculated)

33021.3 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.697

Length

291 amino acids

Sequence
(BLAST)

001: MQEPGLGMMG GGGIGGLSDG DQQQRQLKGE IVTHPLYEQL LAAHVACLRV ATPIDQLPLI DAQLTQSHHL LRSYASQQHH HGNSLSPHER QELDNFLSQY
101: LLVLCTFKEQ LQQHVRVHAV EAVMACREIE QTLQALTGVS LGEGSGATMS DDEEEMQMDF SLDQGGGDGH DMMGFGPLLP TESERTLMER VRQELKIELK
201: QGFKSRIEDV REEILRKRRA GKLPGDTTSV LKNWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTALKSKRK R

Best Arabidopsis Sequence Match ( AT1G62990.1 )
(BLAST)

001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H

Arabidopsis Description

KNAT7Homeobox protein knotted-1-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.