Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g08710.t01 | Wine grape | nucleus | 82.97 | 59.56 |
| VIT_01s0127g00210.t01 | Wine grape | nucleus | 51.09 | 36.79 |
| VIT_14s0060g01180.t01 | Wine grape | nucleus | 38.43 | 28.39 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 32.31 | 20.0 |
| VIT_12s0059g01190.t01 | Wine grape | nucleus | 27.95 | 17.73 |
| VIT_10s0116g00190.t01 | Wine grape | nucleus | 26.2 | 17.14 |
| VIT_02s0025g04630.t01 | Wine grape | nucleus | 17.03 | 13.4 |
| VIT_11s0118g00800.t01 | Wine grape | nucleus | 20.09 | 10.7 |
| VIT_04s0008g06130.t01 | Wine grape | nucleus | 19.21 | 10.3 |
Protein Annotations
| EntrezGene:100253023 | wikigene:100253023 | MapMan:15.5.3.4 | ProteinID:CCB43882 | ProteinID:CCB43882.1 | UniProt:F6GV99 |
| EMBL:FN594952 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:KNOX1 | InterPro:KNOX2 | EntrezGene:LOC100253023 |
| wikigene:LOC100253023 | PFAM:PF03790 | PFAM:PF03791 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF202 | SMART:SM01255 |
| SMART:SM01256 | UniParc:UPI0001984CEA | ArrayExpress:VIT_15s0021g01750 | EnsemblPlantsGene:VIT_15s0021g01750 | EnsemblPlants:VIT_15s0021g01750.t01 | RefSeq:XP_002272026 |
| RefSeq:XP_002272026.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr15:+:12372247..12373023
Molecular Weight (calculated)
25291.8 Da
IEP (calculated)
4.942
GRAVY (calculated)
-0.348
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQLYGLYSP SSSDYHHPPP FPPKNLISPS HYPNFNSPAP FPIFGFDQLL SASSVAVSDA TSMVAQIQGG GSGDEVSSAI RTQIATHPLY PKLLHAYIEC
101: QKVGAPPEVA YLLEEIRRGS ELCRRNTVST CLGADPELDE FMETYCNVLM KYKSDLARPF DEATAFLNNI ETQLNTLCNG ASRSYVSDEV ARSLEEGLEE
201: VEGGKLKTWR STRSVAFTNE ILSKKRCLN
101: QKVGAPPEVA YLLEEIRRGS ELCRRNTVST CLGADPELDE FMETYCNVLM KYKSDLARPF DEATAFLNNI ETQLNTLCNG ASRSYVSDEV ARSLEEGLEE
201: VEGGKLKTWR STRSVAFTNE ILSKKRCLN
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.