Factsheet for VIT_10s0116g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00200.t01
VIT_02s0025g04630.t01
VIT_04s0008g00880.t01
VIT_08s0007g01290.t01
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62360.1	VIT_02s0025g04630.t01	AT1G62990.1	15781858
AT1G62360.1	VIT_08s0056g00050.t01	AT3G54220.1	17785527
AT1G62360.1	VIT_04s0008g00880.t01	AT4G32980.1	15781858
AT1G62360.1	VIT_04s0008g00880.t01	AT4G32980.1	16513846
AT1G62360.1	VIT_04s0008g00880.t01	AT4G32980.1	17785527
AT1G62360.1	VIT_08s0007g01290.t01	AT5G02030.1	12897247
AT1G62360.1	VIT_08s0007g01290.t01	AT5G02030.1	15019989
AT1G62360.1	VIT_08s0007g01290.t01	AT5G02030.1	15781858
AT1G62360.1	VIT_08s0007g01290.t01	AT5G02030.1	16513846
AT1G62360.1	VIT_02s0025g00200.t01	AT5G41410.1	11701881
AT1G62360.1	VIT_02s0025g00200.t01	AT5G41410.1	15781858
AT1G62360.1	VIT_02s0025g00200.t01	AT5G41410.1	17873098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02013	Soybean	nucleus	62.0	80.67
KRH51140	Soybean	nucleus	73.43	70.99
KRH11492	Soybean	nucleus	74.86	69.87
KRH36506	Soybean	nucleus	75.43	69.66
VIT_12s0059g01190.t01	Wine grape	nucleus	71.43	69.25
PGSC0003DMT400043083	Potato	nucleus	66.86	68.22
Solyc02g081120.2.1	Tomato	nucleus	66.86	66.1
AT1G62360.1	Thale cress	nucleus	70.57	64.66
Bra027050.1-P	Field mustard	nucleus	67.71	62.04
CDY19545	Canola	nucleus	67.71	61.88
CDY12943	Canola	nucleus	67.71	61.88
VIT_17s0000g08710.t01	Wine grape	nucleus	39.43	43.26
VIT_14s0060g01180.t01	Wine grape	nucleus	37.71	42.58
VIT_18s0001g08380.t01	Wine grape	nucleus	44.86	42.43
VIT_01s0127g00210.t01	Wine grape	nucleus	37.71	41.51
KRH73381	Soybean	cytosol	26.86	40.87
VIT_15s0021g01750.t01	Wine grape	nucleus	17.14	26.2
VIT_02s0025g04630.t01	Wine grape	nucleus	20.86	25.09
VIT_11s0118g00800.t01	Wine grape	nucleus	24.0	19.53
VIT_04s0008g06130.t01	Wine grape	nucleus	23.71	19.44

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100267474	wikigene:100267474	MapMan:15.5.3.4	ProteinID:CCB57252	ProteinID:CCB57252.1
InterPro:ELK_dom	UniProt:F6HRE4	EMBL:FN596012	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
InterPro:KNOX1	InterPro:KNOX2	EntrezGene:LOC100267474	wikigene:LOC100267474	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF100	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
TIGR:TC59376	UniParc:UPI0002108E68	ArrayExpress:VIT_10s0116g00190	EnsemblPlantsGene:VIT_10s0116g00190	EnsemblPlants:VIT_10s0116g00190.t01	unigene:Vvi.8600
RefSeq:XP_002271944	RefSeq:XP_002271944.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10_random:-:92751..99263

Molecular Weight (calculated)

39437.4 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.712

Length

350 amino acids

Sequence
(BLAST)

001: MAFGDNSSNG LCPMMMMPLM TTSNPNAADA NTLFLPLPPN HNHDLNRNSS RGSSLILENH NHNQHTTTTS TNNHHGSDPG CYFMETHGNN DGSTSSVKAK
101: IMAHPHYHRL LAAYANCQKV GAPPEVVARL EEACASEAAM VRTGTSCIGE DPALDQFMEA YCEMLTKYEQ ELSKPFKEAM LFLSRVECQF KALTVSSSDS
201: AGGEGLDRNG SSEEEVDVNN NFIDPQAEDR ELKGQLLRKY SGYLSSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA ESTGLDQKQI
301: NNWFINQRKR HWKPSEDMQF VVMDATHPGH YYMDNVLGNP FPMDLSPTLL

Best Arabidopsis Sequence Match ( AT1G62360.1 )
(BLAST)

001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML

Arabidopsis Description

STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.