CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00065
KRH00551
KRH03996
KRH05496
KRH27902
KRH27981
KRH40615
KRH41225
KRH52190
KRH57265
KRH59951
KRH61499
KRH65931
KRH75724
KRH77464
KRH77572

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62360.1	KRH03996	AT1G62990.1	15781858
AT1G62360.1	KRH27981	AT1G62990.1	15781858
AT1G62360.1	KRH57265	AT1G62990.1	15781858
AT1G62360.1	KRH77464	AT1G62990.1	15781858
AT1G62360.1	KRH00551	AT3G54220.1	17785527
AT1G62360.1	KRH40615	AT3G54220.1	17785527
AT1G62360.1	KRH05496	AT4G32980.1	15781858
AT1G62360.1	KRH52190	AT4G32980.1	15781858
AT1G62360.1	KRH61499	AT4G32980.1	15781858
AT1G62360.1	KRH05496	AT4G32980.1	16513846
AT1G62360.1	KRH52190	AT4G32980.1	16513846
AT1G62360.1	KRH61499	AT4G32980.1	16513846
AT1G62360.1	KRH05496	AT4G32980.1	17785527
AT1G62360.1	KRH52190	AT4G32980.1	17785527
AT1G62360.1	KRH61499	AT4G32980.1	17785527
AT1G62360.1	KRH00065	AT5G02030.1	12897247
AT1G62360.1	KRH65931	AT5G02030.1	12897247
AT1G62360.1	KRH75724	AT5G02030.1	12897247
AT1G62360.1	KRH00065	AT5G02030.1	15019989
AT1G62360.1	KRH65931	AT5G02030.1	15019989
AT1G62360.1	KRH75724	AT5G02030.1	15019989
AT1G62360.1	KRH00065	AT5G02030.1	15781858
AT1G62360.1	KRH65931	AT5G02030.1	15781858
AT1G62360.1	KRH75724	AT5G02030.1	15781858
AT1G62360.1	KRH00065	AT5G02030.1	16513846
AT1G62360.1	KRH65931	AT5G02030.1	16513846
AT1G62360.1	KRH75724	AT5G02030.1	16513846
AT1G62360.1	KRH27902	AT5G41410.1	11701881
AT1G62360.1	KRH41225	AT5G41410.1	11701881
AT1G62360.1	KRH59951	AT5G41410.1	11701881
AT1G62360.1	KRH77572	AT5G41410.1	11701881
AT1G62360.1	KRH27902	AT5G41410.1	15781858
AT1G62360.1	KRH41225	AT5G41410.1	15781858
AT1G62360.1	KRH59951	AT5G41410.1	15781858
AT1G62360.1	KRH77572	AT5G41410.1	15781858
AT1G62360.1	KRH27902	AT5G41410.1	17873098
AT1G62360.1	KRH41225	AT5G41410.1	17873098
AT1G62360.1	KRH59951	AT5G41410.1	17873098
AT1G62360.1	KRH77572	AT5G41410.1	17873098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36506	Soybean	nucleus	92.8	91.82
KRH02013	Soybean	nucleus	62.4	86.99
KRH51140	Soybean	nucleus	75.2	77.9
KRH73380	Soybean	nucleus	13.33	76.92
VIT_10s0116g00190.t01	Wine grape	nucleus	69.87	74.86
PGSC0003DMT400043083	Potato	nucleus	60.8	66.47
Solyc02g081120.2.1	Tomato	nucleus	61.33	64.97
AT1G62360.1	Thale cress	nucleus	65.87	64.66
Bra027050.1-P	Field mustard	nucleus	62.93	61.78
CDY12943	Canola	nucleus	62.93	61.62
CDY19545	Canola	nucleus	62.93	61.62
KRH14756	Soybean	nucleus	52.0	60.0
KRG99390	Soybean	nucleus	20.0	57.25
KRH61471	Soybean	nucleus	43.47	45.15
KRH69600	Soybean	nucleus	36.8	44.81
KRH33819	Soybean	nucleus	35.2	44.59
KRH74562	Soybean	nucleus	36.27	44.01
KRG90534	Soybean	nucleus	35.2	43.0
KRH15482	Soybean	nucleus	44.0	42.86
KRG88661	Soybean	nucleus	44.0	42.64
KRH45633	Soybean	nucleus	36.0	42.06
KRH73381	Soybean	cytosol	25.6	41.74
KRH63561	Soybean	nucleus	30.93	41.73
KRG96717	Soybean	nucleus	33.07	39.87
KRH68434	Soybean	nucleus	32.53	39.74
KRG99387	Soybean	nucleus	16.0	31.25
KRH77464	Soybean	nucleus	20.53	27.4
KRH27981	Soybean	nucleus	20.27	27.24
KRH03996	Soybean	nucleus	20.53	26.37
KRH57265	Soybean	nucleus	20.53	26.28
KRH03552	Soybean	nucleus	23.2	25.22
KRH20116	Soybean	nucleus	22.93	24.86
KRH37876	Soybean	nucleus	23.2	23.58
KRH12889	Soybean	nucleus	23.2	23.51
KRH52385	Soybean	nucleus	24.53	23.12
KRH61712	Soybean	nucleus	24.53	22.38
KRH15810	Soybean	nucleus	24.27	22.09
KRH05245	Soybean	nucleus	24.0	21.9
KRG98594	Soybean	extracellular	4.0	18.29

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100805837	MapMan:15.5.3.4	EMBL:ACUP02009212	InterPro:ELK_dom	EnsemblPlantsGene:GLYMA_15G111900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	UniProt:I1MFK9	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
EnsemblPlants:KRH11492	ProteinID:KRH11492	ProteinID:KRH11492.1	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791
PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF100
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000226259D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:8769611..8776009

Molecular Weight (calculated)

41995.1 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.741

Length

375 amino acids

Sequence
(BLAST)

001: MEGSSCSNDT SYLLAFGENS GGLCPMTMMP LVTSHHATNP SNPSNNTNNN ENTNCLFIPN CSNSSGTPSI MLHNNNNTDD DNNKTSTNTG LGYYFMESDH
101: HHRNNNNNGS SSSSSSSAVK AKIMAHPHYH RLLAAYVNCQ KVGAPPEVVA RLEEACASAA TMAGDAAAAA GSSCIGEDPA LDQFMEAYCE MLTKYEQELS
201: KPLKEAMLFL QRIECQFKNL TISSTDFACN EGAERNGSSE EDVDLHNMID PQAEDRELKG QLLRKYSGYL GSLKQEFMKK RKKGKLPKEA RQQLLEWWSR
301: HYKWPYPSES QKLALAESTG LDQKQINNWF INQRKRHWKP SEDMQFVVMD PSHPHYYMDN VLGNPFPMDL SHPML

Best Arabidopsis Sequence Match ( AT1G62360.1 )
(BLAST)

001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML

Arabidopsis Description

STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.