CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52385	Soybean	nucleus	89.29	92.21
TraesCS5B01G454600.1	Wheat	nucleus	36.25	84.66
TraesCS6D01G134800.1	Wheat	nucleus	39.66	78.74
Solyc08g041820.2.1	Tomato	nucleus	63.02	74.21
KRH05245	Soybean	nucleus	74.21	74.21
KRH15810	Soybean	nucleus	72.99	72.82
PGSC0003DMT400040351	Potato	nucleus	63.99	72.05
OQU84501	Sorghum	nucleus	52.55	70.59
KRH20116	Soybean	nucleus	58.88	69.94
KRH03552	Soybean	nucleus	58.64	69.86
TraesCS6B01G173900.1	Wheat	nucleus	50.61	69.8
TraesCS6A01G145500.1	Wheat	nucleus	51.58	69.28
Os02t0182800-01	Rice	nucleus	52.55	69.01
KRH77464	Soybean	nucleus	46.96	68.68
HORVU6Hr1G028610.2	Barley	nucleus	51.34	68.28
KRH27981	Soybean	nucleus	46.23	68.1
TraesCS7D01G501000.1	Wheat	nucleus	51.09	67.96
KXG20488	Sorghum	nucleus	52.55	67.71
Os06t0646600-01	Rice	nucleus	53.04	67.49
Zm00001d046568_P001	Maize	nucleus	51.82	67.41
Zm00001d053749_P002	Maize	nucleus	52.31	67.4
KRH37876	Soybean	nucleus	59.85	66.67
TraesCS1B01G135600.1	Wheat	nucleus	45.5	66.55
KRH12889	Soybean	nucleus	59.85	66.49
Zm00001d015549_P001	Maize	nucleus	52.31	66.15
KRH03996	Soybean	nucleus	46.47	65.41
KRH57265	Soybean	nucleus	46.47	65.19
KRG98594	Soybean	extracellular	12.65	63.41
TraesCS7B01G423100.2	Wheat	nucleus	50.61	62.09
HORVU7Hr1G114650.2	Barley	nucleus	47.69	60.68
TraesCS7A01G511800.2	Wheat	nucleus	50.85	52.25
KRG99390	Soybean	nucleus	11.68	36.64
KRH73380	Soybean	nucleus	5.35	33.85
KRH02013	Soybean	nucleus	19.71	30.11
KRH33819	Soybean	nucleus	20.92	29.05
KRH69600	Soybean	nucleus	21.41	28.57
KRH74562	Soybean	nucleus	21.41	28.48
KRH63561	Soybean	nucleus	18.98	28.06
KRH68434	Soybean	nucleus	20.92	28.01
KRG96717	Soybean	nucleus	20.92	27.65
KRG90534	Soybean	nucleus	20.44	27.36
KRH45633	Soybean	nucleus	20.92	26.79
KRH15482	Soybean	nucleus	23.36	24.94
KRG88661	Soybean	nucleus	23.36	24.81
KRH11492	Soybean	nucleus	22.38	24.53
KRH61471	Soybean	nucleus	21.41	24.38
KRH14756	Soybean	nucleus	19.22	24.31
KRH36506	Soybean	nucleus	22.38	24.27
KRH51140	Soybean	nucleus	20.92	23.76
KRH73381	Soybean	cytosol	11.19	20.0
KRG99387	Soybean	nucleus	9.25	19.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100790048	MapMan:15.5.3.4	EMBL:ACUP02002183	InterPro:ELK_dom	EnsemblPlantsGene:GLYMA_04G064100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	UniProt:I1JU99
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EnsemblPlants:KRH61712	ProteinID:KRH61712
ProteinID:KRH61712.1	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000233A065	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:5338042..5342063

Molecular Weight (calculated)

45984.5 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.737

Length

411 amino acids

Sequence
(BLAST)

001: MAYHHNPQEL PLHHFTDQQQ HHNQPLVDNS LLSDPASKPA SDPHQPAPNW LNNALLRTHY TDNNNNNNVN AANNNTNNGT NFLNLHTSTS DSGQWLARPI
101: LNRNHSEVID DVTGAGDSNM AAAESGDLKG DAAAVEGGSD GLMNWQNARL KAEILAHPLY EQLLSAHVAC LRIATPVDQL PRIDAQLTQS QNVVAKYSAF
201: GQAIVGDDKE LDQFLSHYVL LLCSFKEQLQ QHVRVHAMEA VMACWEIEQS LQSLTGVSPG EGTGATMSDE EDEQVDSDAN LFDGALDGPD SMGFGPLIPT
301: ENERSLMERV RHELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL KAWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPST
401: STALKSKRKR S

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.