Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41449 | Canola | nucleus | 67.18 | 72.73 |
| KRH73380 | Soybean | nucleus | 23.66 | 47.69 |
| CDY69524 | Canola | nucleus | 74.05 | 47.55 |
| CDY70923 | Canola | nucleus | 74.05 | 47.32 |
| KRH45633 | Soybean | nucleus | 96.95 | 39.56 |
| KRH74562 | Soybean | nucleus | 83.21 | 35.28 |
| KRH69600 | Soybean | nucleus | 80.92 | 34.42 |
| Bra024591.1-P | Field mustard | nucleus | 74.05 | 29.57 |
| VIT_01s0127g00210.t01 | Wine grape | nucleus | 70.99 | 29.25 |
| Bra007920.1-P | Field mustard | nucleus | 72.52 | 29.05 |
| CDY03742 | Canola | nucleus | 72.52 | 29.05 |
| CDY09448 | Canola | nucleus | 72.52 | 29.05 |
| AT1G70510.2 | Thale cress | nucleus | 69.47 | 28.98 |
| AT1G23380.2 | Thale cress | nucleus | 72.52 | 28.88 |
| Bra016348.1-P | Field mustard | nucleus | 67.18 | 28.03 |
| CDX91713 | Canola | nucleus | 67.18 | 28.03 |
| KRH02013 | Soybean | nucleus | 55.73 | 27.14 |
| Solyc05g005090.2.1 | Tomato | nucleus | 64.12 | 26.25 |
| PGSC0003DMT400035095 | Potato | nucleus | 67.18 | 25.58 |
| KRH63561 | Soybean | nucleus | 52.67 | 24.82 |
| KRH33819 | Soybean | nucleus | 54.2 | 23.99 |
| KRG90534 | Soybean | nucleus | 53.44 | 22.8 |
| KRH14756 | Soybean | nucleus | 55.73 | 22.46 |
| KRG96717 | Soybean | nucleus | 51.15 | 21.54 |
| KRH61471 | Soybean | nucleus | 58.78 | 21.33 |
| KRG88661 | Soybean | nucleus | 62.6 | 21.19 |
| KRH15482 | Soybean | nucleus | 61.83 | 21.04 |
| KRH68434 | Soybean | nucleus | 48.85 | 20.85 |
| KRH51140 | Soybean | nucleus | 55.73 | 20.17 |
| KRH36506 | Soybean | nucleus | 58.02 | 20.05 |
| KRH11492 | Soybean | nucleus | 57.25 | 20.0 |
| KRH27981 | Soybean | nucleus | 38.17 | 17.92 |
| KRH77464 | Soybean | nucleus | 37.4 | 17.44 |
| KRH03996 | Soybean | nucleus | 37.4 | 16.78 |
| KRH57265 | Soybean | nucleus | 37.4 | 16.72 |
| KRH03552 | Soybean | nucleus | 38.17 | 14.49 |
| KRH20116 | Soybean | nucleus | 38.17 | 14.45 |
| KRH12889 | Soybean | nucleus | 37.4 | 13.24 |
| KRH37876 | Soybean | nucleus | 36.64 | 13.01 |
| KRH52385 | Soybean | nucleus | 36.64 | 12.06 |
| KRH05245 | Soybean | nucleus | 37.4 | 11.92 |
| KRH15810 | Soybean | nucleus | 37.4 | 11.89 |
| KRH61712 | Soybean | nucleus | 36.64 | 11.68 |
| KRH73381 | Soybean | cytosol | 12.21 | 6.96 |
| KRG98594 | Soybean | extracellular | 3.82 | 6.1 |
| CDY44142 | Canola | nucleus | 4.58 | 2.55 |
| Bra024592.1-P | Field mustard | nucleus | 3.05 | 1.89 |
| CDY04722 | Canola | nucleus | 2.29 | 1.36 |
| CDY41448 | Canola | nucleus | 1.53 | 0.96 |
| Bra024593.1-P | Field mustard | nucleus | 1.53 | 0.96 |
| KRG99387 | Soybean | nucleus | 0.76 | 0.52 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | UniProt:A0A0R0FBB6 | EMBL:ACUP02011044 | InterPro:ELK_dom | EnsemblPlantsGene:GLYMA_18G1412001 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | EnsemblPlants:KRG99390 | ProteinID:KRG99390 | ProteinID:KRG99390.1 |
| PFAM:PF03789 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 |
| PANTHER:PTHR11850:SF99 | SMART:SM00389 | SMART:SM01188 | SUPFAM:SSF46689 | UniParc:UPI0006EDE553 | SEG:seg |
Description
hypothetical protein
Coordinates
chr18:+:21912236..21913843
Molecular Weight (calculated)
15187.9 Da
IEP (calculated)
10.125
GRAVY (calculated)
-1.079
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: DGGVSSEEGF SAGDGDPQDG QLRSEDRELK DRLLRRFGSH VGSLKLEFSK KKKRGKLPKD ARQTLLQWWN IHYKWPYPTE GDKIALAKST GLDQKQINNW
101: FINQRKRYWK PSENMPFSMV DGLTGRFLTD E
101: FINQRKRYWK PSENMPFSMV DGLTGRFLTD E
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.