Factsheet for Solyc05g005090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035095	Potato	nucleus	91.56	85.17
CDY41449	Canola	nucleus	25.31	66.94
KRG99390	Soybean	nucleus	26.25	64.12
VIT_01s0127g00210.t01	Wine grape	nucleus	60.94	61.32
KRH74562	Soybean	nucleus	57.81	59.87
KRH69600	Soybean	nucleus	57.5	59.74
KRH45633	Soybean	nucleus	59.06	58.88
CDY03742	Canola	nucleus	58.12	56.88
Bra024591.1-P	Field mustard	nucleus	58.12	56.71
Bra007920.1-P	Field mustard	nucleus	57.81	56.57
CDY09448	Canola	nucleus	57.81	56.57
AT1G70510.2	Thale cress	nucleus	55.31	56.37
AT1G23380.2	Thale cress	nucleus	57.81	56.23
Bra016348.1-P	Field mustard	nucleus	53.75	54.78
CDX91713	Canola	nucleus	53.75	54.78
KRG99387	Soybean	nucleus	31.88	53.12
CDY69524	Canola	nucleus	30.94	48.53
Bra024592.1-P	Field mustard	nucleus	31.88	48.11
Bra024593.1-P	Field mustard	nucleus	31.25	47.85
CDY04722	Canola	nucleus	32.81	47.51
CDY70923	Canola	nucleus	30.31	47.32
CDY41448	Canola	nucleus	29.69	45.67
CDY44142	Canola	nucleus	32.81	44.68
Solyc01g100510.2.1	Tomato	nucleus	42.5	40.6
Solyc03g112740.1.1	Tomato	nucleus	21.25	36.96
Solyc04g077210.2.1	Tomato	nucleus	40.94	36.9
Solyc02g081120.2.1	Tomato	nucleus	40.62	36.72
Solyc08g080120.2.1	Tomato	nucleus	23.44	24.19
Solyc12g010410.1.1	Tomato	nucleus	23.75	23.1
Solyc08g041820.2.1	Tomato	nucleus	25.0	22.92
Solyc07g007120.2.1	Tomato	nucleus	24.69	18.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
UniProt:K4BW40	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791
PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF99
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc05g005090.2
EnsemblPlants:Solyc05g005090.2.1	UniParc:UPI0002766A5B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:87082..93883

Molecular Weight (calculated)

36697.8 Da

IEP (calculated)

4.545

GRAVY (calculated)

-0.832

Length

320 amino acids

Sequence
(BLAST)

001: MDDEIMYGFN STRDDYADKA LMSPENLMMQ TEYNNFHNYT NSSIMFGSDP IQLSSEQTLQ NNIYRGNCCG GSGSGGDNNN NNDEDGSNII KAKILSHPYY
101: PKLLNAYIDC QKVGAPAGIV NLLEEIRQQN DFRKPNATCL CIGADPELDE FMETYCDILL KYKSDLSRPF DEATTFLNKI EMQLGNLCKD DDEEEEEELS
201: CGDASSSMRR SEDNELKDRL LRKFGSHLSS LKLEFSKKKK KGKLPKEARQ MLLAWWDDHF RWPYPTEADK NSLAESTGLD PKQINNWFIN QRKRHWKPSE
301: NMQLAVMDNL SAQFFSSDVD

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.