Factsheet for Solyc08g080120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007800.2.1
Solyc02g081120.2.1
Solyc03g113740.2.1
Solyc04g077210.2.1
Solyc06g082460.1.1
Solyc08g041820.2.1
Solyc08g065420.2.1
Solyc08g078700.2.1
Solyc08g080120.2.1
Solyc08g081400.2.1
Solyc09g065820.2.1
Solyc10g082050.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62990.1	Solyc02g081120.2.1	AT1G62360.1	15781858
AT1G62990.1	Solyc08g080120.2.1	AT1G62990.1	15781858
AT1G62990.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT1G62990.1	Solyc01g007800.2.1	AT3G52525.1	15781858
AT1G62990.1	Solyc10g082050.1.1	AT3G52525.1	15781858
AT1G62990.1	Solyc09g065820.2.1	AT4G02590.1	21798944
AT1G62990.1	Solyc04g077210.2.1	AT4G08150.1	15781858
AT1G62990.1	Solyc04g077210.2.1	AT4G08150.1	21798944
AT1G62990.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT1G62990.1	Solyc08g065420.2.1	AT4G32980.1	15781858
AT1G62990.1	Solyc08g041820.2.1	AT5G11060.1	15781858
AT1G62990.1	Solyc08g081400.2.1	AT5G41410.1	11701881
AT1G62990.1	Solyc06g082460.1.1	AT5G58360.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058528	Potato	nucleus	97.42	96.79
KRH27981	Soybean	nucleus	77.42	86.02
KRH77464	Soybean	nucleus	77.42	85.41
VIT_02s0025g04630.t01	Wine grape	nucleus	80.0	85.22
KRH57265	Soybean	nucleus	77.1	81.57
KRH03996	Soybean	nucleus	76.13	80.82
AT1G62990.1	Thale cress	nucleus	75.16	80.07
Bra036636.1-P	Field mustard	nucleus	75.48	79.59
CDY66559	Canola	nucleus	75.48	79.59
CDY64892	Canola	nucleus	75.16	79.25
CDY45968	Canola	nucleus	73.55	77.82
CDX93852	Canola	nucleus	55.16	77.03
Bra027006.1-P	Field mustard	nucleus	73.23	76.95
GSMUA_Achr1P03660_001	Banana	nucleus	70.97	75.6
Os03t0123500-02	Rice	nucleus	69.35	68.47
Zm00001d027431_P002	Maize	nucleus	68.06	68.06
TraesCS5A01G515000.1	Wheat	nucleus	67.42	66.99
TraesCS4B01G346100.1	Wheat	nucleus	67.42	66.99
TraesCS4D01G341000.1	Wheat	nucleus	67.1	66.88
Zm00001d048471_P001	Maize	nucleus	68.39	66.67
HORVU4Hr1G084680.1	Barley	nucleus	67.74	66.67
KXG40306	Sorghum	nucleus	69.03	66.25
Solyc08g041820.2.1	Tomato	nucleus	62.26	55.3
Solyc12g010410.1.1	Tomato	nucleus	54.19	51.06
Solyc07g007120.2.1	Tomato	nucleus	60.65	43.62
Solyc01g100510.2.1	Tomato	nucleus	27.74	25.67
Solyc05g005090.2.1	Tomato	nucleus	24.19	23.44
Solyc04g077210.2.1	Tomato	nucleus	26.45	23.1
Solyc02g081120.2.1	Tomato	nucleus	22.9	20.06
Solyc03g112740.1.1	Tomato	nucleus	9.03	15.22

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	UniProt:K4CP12	InterPro:KNOX1
InterPro:KNOX2	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213
PANTHER:PTHR11850	PANTHER:PTHR11850:SF74	SMART:SM00389	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc08g080120.2	EnsemblPlants:Solyc08g080120.2.1	UniParc:UPI000276B6FF	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:63462961..63467541

Molecular Weight (calculated)

35309.7 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.722

Length

310 amino acids

Sequence
(BLAST)

001: MQQEEGGLGL MGSSNTSGLG GGDISSMMIS SEDHHNRNLN HYNQLKSEIA THPLYEQLLS AHVACLRVAT PIDQLPLIDA QLTQSHNLLR SYASSQQQQQ
101: QHSLSHHERQ ELDNFLAQYL LVLCSFKEQL QQHVRVHAVE AVMACREIEQ NLQLLTGATL GEGTGATMSD DEDELQMDFS LDVSGGDAHD LMGMGFGLPT
201: ESERSLMERV RQELKIELKQ GFRSRIEDVR EEILRKRRAG KLPGDTTTVL KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS
301: VTSLKSKRKR

Best Arabidopsis Sequence Match ( AT1G62990.1 )
(BLAST)

001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H

Arabidopsis Description

KNAT7Homeobox protein knotted-1-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.