Factsheet for Solyc08g065420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081120.2.1
Solyc08g041820.2.1
Solyc08g080120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	Solyc02g081120.2.1	AT1G62360.1	15781858
AT4G32980.1	Solyc02g081120.2.1	AT1G62360.1	16513846
AT4G32980.1	Solyc02g081120.2.1	AT1G62360.1	17785527
AT4G32980.1	Solyc08g080120.2.1	AT1G62990.1	15781858
AT4G32980.1	Solyc08g041820.2.1	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076995	Potato	nucleus	89.98	93.15
CDX75307	Canola	nucleus	24.15	60.81
VIT_04s0008g00880.t01	Wine grape	nucleus	52.59	49.92
KRH52190	Soybean	nucleus	42.75	43.53
KRH61499	Soybean	nucleus	44.01	42.78
KRH05496	Soybean	nucleus	42.75	41.86
CDY13511	Canola	nucleus	31.66	40.5
Bra037031.1-P	Field mustard	nucleus	31.31	40.05
Bra011403.1-P	Field mustard	nucleus	33.09	39.7
CDX68927	Canola	nucleus	32.74	39.7
CDX75313	Canola	nucleus	32.92	39.48
AT4G32980.1	Thale cress	nucleus	33.27	39.32
CDX68925	Canola	cytosol	12.52	38.67
CDX72383	Canola	nucleus	31.13	38.5
GSMUA_Achr4P02680_001	Banana	nucleus	32.2	31.09
Solyc10g086640.1.1	Tomato	nucleus	12.88	27.91
Zm00001d046223_P006	Maize	nucleus	24.33	27.7
KXG20197	Sorghum	nucleus	24.33	27.53
TraesCS7A01G358300.1	Wheat	nucleus	26.3	26.58
TraesCS7D01G364500.1	Wheat	nucleus	25.58	26.0
TraesCS7B01G269400.1	Wheat	nucleus	25.58	25.91
Zm00001d016298_P001	Maize	nucleus	24.51	25.0
Os02t0226600-01	Rice	nucleus	23.97	24.86
EES04785	Sorghum	nucleus	24.69	24.47
Zm00001d002249_P001	Maize	nucleus	15.03	23.86
Os06t0562300-00	Rice	nucleus	22.9	23.49
HORVU7Hr1G088090.4	Barley	nucleus	22.9	23.1
CDX68906	Canola	nucleus	10.55	22.78
Solyc04g080780.2.1	Tomato	nucleus	15.74	22.0
Solyc09g011380.2.1	Tomato	nucleus	17.17	19.05
Solyc08g081400.2.1	Tomato	nucleus	20.04	17.39
Solyc01g109980.2.1	Tomato	nucleus	19.68	17.05
Solyc11g068950.1.1	Tomato	nucleus	19.86	16.79
Solyc01g007070.2.1	Tomato	nucleus	20.39	16.29
Solyc04g080790.2.1	Tomato	nucleus	19.14	16.19
Solyc06g074120.2.1	Tomato	nucleus	20.04	16.02
Solyc11g069890.1.1	Tomato	golgi	16.46	15.86
Solyc02g065490.2.1	Tomato	nucleus	17.53	15.71
Solyc02g089940.2.1	Tomato	nucleus	18.6	14.33
Solyc04g079830.2.1	Tomato	nucleus	17.71	14.31

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008285
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009653	GO:GO:0009791	GO:GO:0009838
GO:GO:0009908	GO:GO:0009987	GO:GO:0010227	GO:GO:0010228	GO:GO:0010371	GO:GO:0019748
GO:GO:0043565	GO:GO:0090470	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K4CLC2	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF92	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g065420.2	EnsemblPlants:Solyc08g065420.2.1
UniParc:UPI000276B6C4	SEG:seg	:	:	:	:

Description

Homeobox protein ATH1 [Source:Projected from Arabidopsis thaliana (AT4G32980) UniProtKB/Swiss-Prot;Acc:P48731]

Coordinates

chr8:+:53427949..53430076

Molecular Weight (calculated)

62671.0 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.420

Length

559 amino acids

Sequence
(BLAST)

001: MAEPLRIIDE NFLHTTIVPI SFPETVCMNN QNQIMDGHGI PYPFMLQGEA VNTSHGFLNV PNFPRPVDTE AIHNVLPVGR NRIKEYSVST SYPISNAYAD
101: DQYMEGIPIS AVSLANLLAA RNAMHENPEN LAVLAPLSHP TEGQKMDGLD YPNVLNHSFG SYRNYEFDGV SEIGGMVVGR AGSQPFQLTE NVNSNTWFSS
201: ETASLSSDSP SGSSRFSNDL CLSLTTSQSA VACGTTIRDQ CSDISCSGVT NHAFPQRRFD SELTSCNSRN LSLSFGSYKP VYLSQFLTGS RYLRVMQEIL
301: SEIAQLSLQN HNLVGYRGNG TENGANTSFA LNSDAGRGYA AMSSDDSPDG LMGCEAKKKN LVALLQVVDD QYNQCLDEIH MVISAFHAVT ELDPSIHARF
401: ALQTISSLYK NLRERISNYI LAMGEHFNKG GGERGVEKSF ETSFIQKQWA LQQLKRKDHQ LWRPQRGLPE RSVSVLRAWM FQNFLHPYPK DAEKQLLAVK
501: SGLTRSQVSN WFINARVRLW KPMIEEMYAE MNRRKIRAGN EEDHRRNHKI IESHLFTMK

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.