CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG20488
KXG40306
OQU84501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	KXG40306	AT1G62990.1	15781858
AT4G32980.1	KXG20488	AT5G11060.1	15781858
AT4G32980.1	OQU84501	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016298_P001	Maize	nucleus	83.87	86.31
Zm00001d002249_P001	Maize	nucleus	47.52	76.14
Os02t0226600-01	Rice	nucleus	57.98	60.67
KXG20197	Sorghum	nucleus	37.23	42.51
CDX75307	Canola	nucleus	16.49	41.89
KXG37846	Sorghum	nucleus	17.02	26.97
Bra011403.1-P	Field mustard	nucleus	22.16	26.82
CDX75313	Canola	nucleus	22.16	26.82
CDX68927	Canola	nucleus	21.45	26.25
KRH52190	Soybean	nucleus	25.53	26.23
PGSC0003DMT400076995	Potato	nucleus	25.0	26.11
CDY13511	Canola	nucleus	19.86	25.63
AT4G32980.1	Thale cress	nucleus	21.45	25.58
KRH05496	Soybean	nucleus	25.89	25.57
VIT_04s0008g00880.t01	Wine grape	nucleus	26.6	25.47
Bra037031.1-P	Field mustard	nucleus	19.68	25.4
GSMUA_Achr2P19430_001	Banana	nucleus	24.11	25.14
KRH61499	Soybean	nucleus	25.53	25.04
GSMUA_AchrUn_...	Banana	nucleus	26.24	24.96
Solyc08g065420.2.1	Tomato	nucleus	24.47	24.69
CDX72383	Canola	nucleus	19.68	24.56
CDX68925	Canola	cytosol	7.09	22.1
EER89055	Sorghum	nucleus	16.49	17.75
EER92806	Sorghum	nucleus	18.09	17.29
KXG24130	Sorghum	nucleus	18.97	16.26
EES09309	Sorghum	nucleus	19.86	16.23
EES18336	Sorghum	nucleus	16.13	15.96
EER91079	Sorghum	nucleus	18.26	15.87
KXG40303	Sorghum	nucleus	17.38	15.65
EER92018	Sorghum	nucleus	17.55	15.62
EES03882	Sorghum	nucleus	15.25	14.5
CDX68906	Canola	nucleus	6.38	13.9
EER93512	Sorghum	nucleus, plastid	18.97	13.9

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	EntrezGene:8073792	UniProt:C5XYH2	EnsemblPlants:EES04785	ProteinID:EES04785
ProteinID:EES04785.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF119	SMART:SM00389	SMART:SM00574	EnsemblPlantsGene:SORBI_3004G097700	SUPFAM:SSF46689	UniParc:UPI0001A858C2
RefSeq:XP_002451809.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8672667..8675878

Molecular Weight (calculated)

58848.0 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.214

Length

564 amino acids

Sequence
(BLAST)

001: MASDPSSFSP IGVVEAMGGG YFMAGGSNSY GGTGGGIMSA EVPHFHPGML LDHGGGFGFG GLGDAAVCGA GAATATDLVG AHYAANNIVL ASFASQLFAS
101: TTAQPQDDRT GGRTPPEEMD DEVYGVPGSD SRVVAASLRC PSQSGPMAVW SSSKKPYGVW TGAGGPVAVP ANDPYHLAGA EFHPDAGGSF HYYPLAVAAC
201: SGANASAAAA SELSLTLCSN SISSSDSAAL NAAEQCSSGA SRSALTELPR ARSGSRMAPH FAVVVARSRY AAVVQEVLND VVGHMLDGVA DVADDSCSGV
301: DGGGSVGAPS AVSSNRFMVA SSADAGARWG EAQRVRSKLL KTLQLMDQKY NQCLDEIQST TAKFNTLMHS PSGAGNGGSI CAPFAHRAVS AMYRGLRRRL
401: AGEIMAAASR ASCWGESSSS VTATAAGGDV ERSWESAFIQ KHWSAQQLRR AEKQCWRPQR GLPEKSVAVL KAWMFENFLH PYPKDHEKDV LAARSGLSRN
501: QVSNWFINAR VRLWKPMIEE MYQDLKGSSG AGGGGGQRPP AMELLQHQHM SKRRIICELE DGGQ

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.