CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02013
KRH03996
KRH05245
KRH11492
KRH27981
KRH36506
KRH51140
KRH57265
KRH73381
KRH77464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	KRH02013	AT1G62360.1	15781858
AT4G32980.1	KRH11492	AT1G62360.1	15781858
AT4G32980.1	KRH36506	AT1G62360.1	15781858
AT4G32980.1	KRH51140	AT1G62360.1	15781858
AT4G32980.1	KRH73381	AT1G62360.1	15781858
AT4G32980.1	KRH02013	AT1G62360.1	16513846
AT4G32980.1	KRH11492	AT1G62360.1	16513846
AT4G32980.1	KRH36506	AT1G62360.1	16513846
AT4G32980.1	KRH51140	AT1G62360.1	16513846
AT4G32980.1	KRH73381	AT1G62360.1	16513846
AT4G32980.1	KRH02013	AT1G62360.1	17785527
AT4G32980.1	KRH11492	AT1G62360.1	17785527
AT4G32980.1	KRH36506	AT1G62360.1	17785527
AT4G32980.1	KRH51140	AT1G62360.1	17785527
AT4G32980.1	KRH73381	AT1G62360.1	17785527
AT4G32980.1	KRH03996	AT1G62990.1	15781858
AT4G32980.1	KRH27981	AT1G62990.1	15781858
AT4G32980.1	KRH57265	AT1G62990.1	15781858
AT4G32980.1	KRH77464	AT1G62990.1	15781858
AT4G32980.1	KRH05245	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61499	Soybean	nucleus	89.62	85.57
KRH05496	Soybean	nucleus	69.03	66.37
CDX75307	Canola	nucleus	24.77	61.26
VIT_04s0008g00880.t01	Wine grape	nucleus	51.37	47.88
PGSC0003DMT400076995	Potato	nucleus	42.62	43.33
CDY13511	Canola	nucleus	34.06	42.79
Solyc08g065420.2.1	Tomato	nucleus	43.53	42.75
CDX68927	Canola	nucleus	35.88	42.73
Bra037031.1-P	Field mustard	nucleus	33.7	42.33
Bra011403.1-P	Field mustard	nucleus	35.88	42.27
CDX75313	Canola	nucleus	35.52	41.85
CDX72383	Canola	nucleus	33.88	41.15
AT4G32980.1	Thale cress	nucleus	34.61	40.17
CDX68925	Canola	cytosol	13.11	39.78
GSMUA_Achr4P02680_001	Banana	nucleus	34.97	33.16
Zm00001d046223_P006	Maize	nucleus	25.5	28.51
KXG20197	Sorghum	nucleus	25.32	28.14
TraesCS7D01G364500.1	Wheat	nucleus	27.32	27.27
Os02t0226600-01	Rice	nucleus	26.78	27.27
CDX68906	Canola	nucleus	12.75	27.03
TraesCS7B01G269400.1	Wheat	nucleus	26.96	26.81
TraesCS7A01G358300.1	Wheat	nucleus	26.59	26.4
Zm00001d016298_P001	Maize	nucleus	26.23	26.28
Os06t0562300-00	Rice	nucleus	25.5	25.69
EES04785	Sorghum	nucleus	26.23	25.53
Zm00001d002249_P001	Maize	nucleus	15.66	24.43
KRH61118	Soybean	nucleus	18.58	23.18
HORVU7Hr1G088090.4	Barley	nucleus	23.13	22.92
KRH51793	Soybean	nucleus	18.4	22.6
KRH26689	Soybean	nucleus	20.4	21.66
KRH51485	Soybean	nucleus	20.77	20.5
KRH32854	Soybean	nucleus	23.68	19.67
KRH59951	Soybean	nucleus	22.59	19.53
KRH72182	Soybean	nucleus	23.5	19.43
KRG96259	Soybean	nucleus	23.86	19.26
KRH22635	Soybean	nucleus	24.59	19.23
KRH41225	Soybean	nucleus	22.59	19.2
KRH15136	Soybean	nucleus	22.22	19.18
KRH68008	Soybean	nucleus	23.68	19.15
KRH05875	Soybean	nucleus	21.13	18.99
KRH27902	Soybean	nucleus	22.04	18.85
KRH77572	Soybean	nucleus	22.04	18.73
KRH51792	Soybean	nucleus	21.49	18.52
KRH00065	Soybean	nucleus	19.31	18.5
KRH61114	Soybean	nucleus	21.68	18.42
KRH25319	Soybean	nucleus	23.86	17.68
KRH75724	Soybean	nucleus	19.49	17.57
KRH65931	Soybean	nucleus	19.67	17.5
KRH60794	Soybean	nucleus	20.95	17.37
KRG88864	Soybean	nucleus	24.04	17.28
KRH69971	Soybean	nucleus	21.13	17.21
KRH28575	Soybean	nucleus	20.58	16.03
KRH76894	Soybean	nucleus	20.4	15.77
KRH25064	Soybean	nucleus	21.49	15.53
KRH30618	Soybean	nucleus	21.31	15.23
KRH08329	Soybean	nucleus	21.31	15.06
KRH22860	Soybean	nucleus	21.31	14.89
KRH26495	Soybean	nucleus	21.13	14.61

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100806862	MapMan:15.5.3.5	EMBL:ACUP02003411	EnsemblPlantsGene:GLYMA_06G051600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K7KT71
EnsemblPlants:KRH52190	ProteinID:KRH52190	ProteinID:KRH52190.1	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF92	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689
UniParc:UPI0002952FA4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3896111..3898130

Molecular Weight (calculated)

60918.5 Da

IEP (calculated)

6.088

GRAVY (calculated)

-0.441

Length

549 amino acids

Sequence
(BLAST)

001: MESDMYTAAL DISGREATVI DEISQHSASN PLIQCYSLDL NNQSHIISGI SMLSGEQVIS QGKTIVAVGD ASNPMENTEL QEHLAGGMPI TPSSLAAILA
101: ARTGLEENLG NSSSALPPSL CSMGALGAFF NNLQGTSNSN PLSATFEDCG YNEVSSKWNA NKFPKAPEID GTCQPYPFIA NLDQNEWPSS NVANMANHAY
201: HSSHFSKELS LSLATSTTAG MCSEVSCSNV TPCMNGTMSG LEQASCSSSR ELSMNLGGNK YVEFSPEVLE SRYLVGIQEI LAQIGRYSFE NLEQLNYSAG
301: NHRSGGNKSS SAFPPKRRIL IDHNANSTYE AHAESPLQRH AAESKKSQLL TLLQLVDNRY SQCLDEIHTV VSAFQAATEL DPQIHAHFAL QTISILYRDL
401: RERISNYILA MGSNFNNSCS EENEWSVETS FLQKQWALQQ LKRKDQLWRP QRGLPERSVS VLRAWMFQNF LHPYPKDAEK HLLAVKSGLT RSQVSNWFIN
501: ARVRLWKPMI EEMYAEMNKR KACRNEEGMQ SNHGTRISTT NERFNQCQL

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.