CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02013
KRH03996
KRH05245
KRH11062
KRH11492
KRH21207
KRH27981
KRH36506
KRH42918
KRH51140
KRH57265
KRH59028
KRH61471
KRH73381
KRH77464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41410.1	KRH02013	AT1G62360.1	11701881
AT5G41410.1	KRH11492	AT1G62360.1	11701881
AT5G41410.1	KRH36506	AT1G62360.1	11701881
AT5G41410.1	KRH51140	AT1G62360.1	11701881
AT5G41410.1	KRH73381	AT1G62360.1	11701881
AT5G41410.1	KRH02013	AT1G62360.1	15781858
AT5G41410.1	KRH11492	AT1G62360.1	15781858
AT5G41410.1	KRH36506	AT1G62360.1	15781858
AT5G41410.1	KRH51140	AT1G62360.1	15781858
AT5G41410.1	KRH73381	AT1G62360.1	15781858
AT5G41410.1	KRH02013	AT1G62360.1	17873098
AT5G41410.1	KRH11492	AT1G62360.1	17873098
AT5G41410.1	KRH36506	AT1G62360.1	17873098
AT5G41410.1	KRH51140	AT1G62360.1	17873098
AT5G41410.1	KRH73381	AT1G62360.1	17873098
AT5G41410.1	KRH03996	AT1G62990.1	11701881
AT5G41410.1	KRH27981	AT1G62990.1	11701881
AT5G41410.1	KRH57265	AT1G62990.1	11701881
AT5G41410.1	KRH77464	AT1G62990.1	11701881
AT5G41410.1	KRH61471	AT4G08150.1	11701881
AT5G41410.1	KRH61471	AT4G08150.1	15781858
AT5G41410.1	KRH61471	AT4G08150.1	17873098
AT5G41410.1	KRH11062	AT4G18830.1	15781858
AT5G41410.1	KRH21207	AT4G18830.1	15781858
AT5G41410.1	KRH42918	AT4G18830.1	15781858
AT5G41410.1	KRH59028	AT4G18830.1	15781858
AT5G41410.1	KRH05245	AT5G11060.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27902	Soybean	nucleus	94.74	95.33
KRH41225	Soybean	nucleus	71.52	71.52
KRH59951	Soybean	nucleus	69.5	70.71
VIT_02s0025g00200.t01	Wine grape	nucleus	66.87	66.87
GSMUA_Achr1P03680_001	Banana	nucleus	26.47	57.77
PGSC0003DMT400032122	Potato	nucleus	56.5	57.66
Solyc08g081400.2.1	Tomato	nucleus	55.73	55.9
CDY45383	Canola	nucleus	22.6	55.51
GSMUA_Achr2P04310_001	Banana	nucleus	45.82	53.05
GSMUA_Achr1P06400_001	Banana	nucleus	40.25	50.39
GSMUA_Achr4P04480_001	Banana	nucleus	31.89	48.93
GSMUA_Achr9P18740_001	Banana	nucleus	42.72	47.92
AT5G41410.1	Thale cress	nucleus	45.2	47.79
CDY44476	Canola	nucleus	41.64	47.36
Bra025497.1-P	Field mustard	nucleus	43.34	47.22
Zm00001d035907_P001	Maize	nucleus	33.13	42.97
EER89055	Sorghum	nucleus	34.21	42.18
GSMUA_Achr4P12180_001	Banana	nucleus	33.75	41.68
Os06t0108900-02	Rice	nucleus	33.44	40.75
TraesCS7A01G022600.1	Wheat	nucleus	30.34	40.58
TraesCS7D01G019800.1	Wheat	nucleus	30.19	40.37
KXG40303	Sorghum	nucleus	39.01	40.26
Os03t0124000-01	Rice	nucleus	36.53	39.93
TraesCS4A01G469900.1	Wheat	nucleus	30.65	39.92
Zm00001d027435_P001	Maize	nucleus	38.24	39.84
TraesCS1D01G193800.1	Wheat	nucleus	36.22	39.73
TraesCS1B01G191800.1	Wheat	nucleus	35.91	39.66
TraesCS1A01G183400.1	Wheat	nucleus	35.91	39.59
Os10t0534900-01	Rice	nucleus	35.76	39.42
TraesCS4B01G345600.1	Wheat	nucleus	37.15	39.28
TraesCS4D01G340700.1	Wheat	nucleus	37.0	38.99
HORVU1Hr1G049760.1	Barley	nucleus	35.91	38.93
TraesCS5A01G514700.1	Wheat	nucleus	36.22	38.68
HORVU4Hr1G084590.2	Barley	nucleus	36.22	37.62
EER92018	Sorghum	nucleus	34.21	34.86
KRH26689	Soybean	nucleus	26.16	32.69
Zm00001d029736_P001	Maize	nucleus, plastid	34.06	31.98
KRH28575	Soybean	nucleus	33.75	30.92
KRH76894	Soybean	nucleus	33.75	30.7
KRH61118	Soybean	nucleus	20.74	30.45
KRH69971	Soybean	nucleus	31.11	29.82
KRH51793	Soybean	nucleus	20.43	29.53
KRH32854	Soybean	nucleus	30.03	29.35
KRH72182	Soybean	nucleus	29.88	29.07
KRH00065	Soybean	nucleus	25.7	28.97
KRH51485	Soybean	nucleus	24.61	28.6
KRG96259	Soybean	nucleus	29.88	28.38
KRH08329	Soybean	nucleus	33.75	28.06
KRH68008	Soybean	nucleus	29.41	27.98
KRH75724	Soybean	nucleus	26.16	27.75
KRH22635	Soybean	nucleus	29.88	27.49
KRH65931	Soybean	nucleus	25.85	27.07
KRH15136	Soybean	nucleus	26.63	27.04
KRH05875	Soybean	nucleus	25.08	26.51
KRH51792	Soybean	nucleus	26.01	26.37
KRH60794	Soybean	nucleus	26.93	26.28
KRH61114	Soybean	nucleus	26.01	26.01
KRH25319	Soybean	nucleus	29.1	25.37
KRG88864	Soybean	nucleus	29.41	24.87
KRH26495	Soybean	nucleus	27.86	22.67
KRH22860	Soybean	nucleus	27.55	22.65
KRH25064	Soybean	nucleus	26.47	22.5
KRH30618	Soybean	nucleus	26.63	22.4
KRH52190	Soybean	nucleus	18.73	22.04
KRH05496	Soybean	nucleus	17.96	20.32
KRH61499	Soybean	nucleus	17.8	20.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100800542	MapMan:15.5.3.5	EMBL:ACUP02000680	EnsemblPlantsGene:GLYMA_01G221500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	UniProt:I1JA88	InterPro:IPR001356
ProteinID:KRH77571.1	EnsemblPlants:KRH77572	ProteinID:KRH77572	ProteinID:KRH77572.1	ProteinID:KRH77573.1	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF66	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0002337602	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:55055831..55060750

Molecular Weight (calculated)

71975.7 Da

IEP (calculated)

6.553

GRAVY (calculated)

-0.695

Length

646 amino acids

Sequence
(BLAST)

001: MARQPCDDKS SSGFCYSDVS SGNPTMLVNQ IQGFVSDPEM YNLTTGMEMI GFPKSDTNAV MWRSFIPKPG PSSSKTINDN STTFYHHDYN NKHADFTPAG
101: NISQTSADNL IVGSHDSASW QDNINNNNNS SRFDDSSLRC VFPCETNERP SQGLSLSLSS TNPSSIGLQS FELRQTGQHL DFVSSSSRDG FFGKPVSLQQ
201: QQMVSQDGYV SSNSKVASVY QQGHFLVKNS KFLVPAQDLL NEFCSLDAKQ SDLGKPTKSL NKKQWEEENN GIGSSKKHSL TSLEFVELQK RKTKLLSMLE
301: EVDRRYKHYR NQMKSVVSSF EAVAGNGAAT VYSALALKAM SRHFRCLKDG IMAQIQATRK AMGEKDPVAP GTTRGETPRL KVIDQTLRQQ RAFQQMSMME
401: THPWRPQRGL PERAVSVLRA WLFEHFLHPY PSDVDKHILA RQTGLSRGQV SNWFINARVR LWKPMVEEMY LEEVKDPENN IASSEGATDQ DNDINPNNVE
501: YPPPPSSSRS EDQKPSLVRI DSECASSIIN NHSTPDNKND PKGHEQCFGS VELDFSSYTH HSSGIVSYGS NDQNGNNNQS GVSLTLGLQQ HGVSLAFPPA
601: TQSSLYYPRD QIEDCQPVQY SLFDGEGQNL PYRNLMGAQL LHDLAG

Best Arabidopsis Sequence Match ( AT5G41410.1 )
(BLAST)

001: MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH YNHQIFGSNS NMGMMIDFSK QQQIRMTSGS DHHHHHHQTS GGTDQNQLLE DSSSAMRLCN
101: VNNDFPSEVN DERPPQRPSQ GLSLSLSSSN PTSISLQSFE LRPQQQQQQG YSGNKSTQHQ NLQHTQMMMM MMNSHHQNNN NNNHQHHNHH QFQIGSSKYL
201: SPAQELLSEF CSLGVKESDE EVMMMKHKKK QKGKQQEEWD TSHHSNNDQH DQSATTSSKK HVPPLHSLEF MELQKRKAKL LSMLEELKRR YGHYREQMRV
301: AAAAFEAAVG LGGAEIYTAL ASRAMSRHFR CLKDGLVGQI QATSQALGER EEDNRAVSIA ARGETPRLRL LDQALRQQKS YRQMTLVDAH PWRPQRGLPE
401: RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMIEEMYCE ETRSEQMEIT NPMMIDTKPD PDQLIRVEPE SLSSIVTNPT
501: SKSGHNSTHG TMSLGSTFDF SLYGNQAVTY AGEGGPRGDV SLTLGLQRND GNGGVSLALS PVTAQGGQLF YGRDHIEEGP VQYSASMLDD DQVQNLPYRN
601: LMGAQLLHDI V

Arabidopsis Description

BEL1Homeobox protein BEL1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q38897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.