CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX78407
CDX78899
CDX80491
CDX83145
CDX88165
CDX93852
CDX99420
CDY01560
CDY04827
CDY06241
CDY09258
CDY09945
CDY12943
CDY13472
CDY19545
CDY34012
CDY45968
CDY62560
CDY64892
CDY66559
CDY67505
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41410.1	CDY06241	AT1G06920.1	15781858
AT5G41410.1	CDY09945	AT1G06920.1	15781858
AT5G41410.1	CDY67505	AT1G06920.1	15781858
AT5G41410.1	CDY12943	AT1G62360.1	11701881
AT5G41410.1	CDY19545	AT1G62360.1	11701881
AT5G41410.1	CDY12943	AT1G62360.1	15781858
AT5G41410.1	CDY19545	AT1G62360.1	15781858
AT5G41410.1	CDY12943	AT1G62360.1	17873098
AT5G41410.1	CDY19545	AT1G62360.1	17873098
AT5G41410.1	CDX93852	AT1G62990.1	11701881
AT5G41410.1	CDY45968	AT1G62990.1	11701881
AT5G41410.1	CDY64892	AT1G62990.1	11701881
AT5G41410.1	CDY66559	AT1G62990.1	11701881
AT5G41410.1	CDX83145	AT4G08150.1	11701881
AT5G41410.1	CDY34012	AT4G08150.1	11701881
AT5G41410.1	CDY68624	AT4G08150.1	11701881
AT5G41410.1	CDX83145	AT4G08150.1	15781858
AT5G41410.1	CDY34012	AT4G08150.1	15781858
AT5G41410.1	CDY68624	AT4G08150.1	15781858
AT5G41410.1	CDX83145	AT4G08150.1	17873098
AT5G41410.1	CDY34012	AT4G08150.1	17873098
AT5G41410.1	CDY68624	AT4G08150.1	17873098
AT5G41410.1	CDX78899	AT4G18830.1	15781858
AT5G41410.1	CDX99420	AT4G18830.1	15781858
AT5G41410.1	CDY01560	AT4G18830.1	15781858
AT5G41410.1	CDY09258	AT4G18830.1	15781858
AT5G41410.1	CDY62560	AT4G18830.1	15781858
AT5G41410.1	CDX68812	AT4G32040.1	11701881
AT5G41410.1	CDX72343	AT4G32040.1	11701881
AT5G41410.1	CDX75215	AT4G32040.1	11701881
AT5G41410.1	CDY13472	AT4G32040.1	11701881
AT5G41410.1	CDX68812	AT4G32040.1	17873098
AT5G41410.1	CDX72343	AT4G32040.1	17873098
AT5G41410.1	CDX75215	AT4G32040.1	17873098
AT5G41410.1	CDY13472	AT4G32040.1	17873098
AT5G41410.1	CDY04827	AT5G01840.1	15781858
AT5G41410.1	CDX78407	AT5G11060.1	11701881
AT5G41410.1	CDX80491	AT5G25220.1	11701881
AT5G41410.1	CDX88165	AT5G25220.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44476	Canola	nucleus	87.07	40.32
AT5G41410.1	Thale cress	nucleus	82.51	35.52
CDX83753	Canola	nucleus	23.57	32.63
CDY21826	Canola	extracellular, plastid	9.89	27.08
CDX75307	Canola	nucleus	22.43	26.58
GSMUA_Achr1P06400_001	Banana	nucleus	52.09	26.55
GSMUA_Achr2P04310_001	Banana	nucleus	53.99	25.45
TraesCS7D01G019800.1	Wheat	nucleus	46.39	25.26
TraesCS7A01G022600.1	Wheat	nucleus	46.39	25.26
GSMUA_Achr4P04480_001	Banana	nucleus	40.3	25.18
VIT_02s0025g00200.t01	Wine grape	nucleus	60.08	24.46
TraesCS4A01G469900.1	Wheat	nucleus	45.63	24.19
Zm00001d035907_P001	Maize	nucleus	45.25	23.9
Os06t0108900-02	Rice	nucleus	47.91	23.77
GSMUA_Achr1P03680_001	Banana	nucleus	26.24	23.31
PGSC0003DMT400032122	Potato	nucleus	55.89	23.22
CDX73171	Canola	nucleus	25.48	23.18
CDY47523	Canola	nucleus	25.48	23.18
GSMUA_Achr4P12180_001	Banana	nucleus	46.01	23.14
EER89055	Sorghum	nucleus	45.63	22.9
Solyc08g081400.2.1	Tomato	nucleus	55.89	22.83
KRH27902	Soybean	nucleus	55.51	22.74
KRH77572	Soybean	nucleus	55.51	22.6
KRH59951	Soybean	nucleus	53.61	22.2
Os10t0534900-01	Rice	nucleus	49.43	22.18
CDY29411	Canola	nucleus	32.32	21.85
Os03t0124000-01	Rice	nucleus	48.67	21.66
TraesCS1B01G191800.1	Wheat	nucleus	47.91	21.54
KRH41225	Soybean	nucleus	52.85	21.52
TraesCS1A01G183400.1	Wheat	nucleus	47.91	21.5
KXG40303	Sorghum	nucleus	50.95	21.41
TraesCS1D01G193800.1	Wheat	nucleus	47.91	21.39
HORVU1Hr1G049760.1	Barley	nucleus	47.91	21.14
Zm00001d027435_P001	Maize	nucleus	49.81	21.13
TraesCS4D01G340700.1	Wheat	nucleus	48.67	20.88
TraesCS4B01G345600.1	Wheat	nucleus	48.29	20.79
CDY02261	Canola	nucleus	35.36	20.71
TraesCS5A01G514700.1	Wheat	nucleus	47.53	20.66
GSMUA_Achr9P18740_001	Banana	nucleus	45.25	20.66
CDX89711	Canola	nucleus	35.74	20.66
HORVU4Hr1G084590.2	Barley	nucleus	48.29	20.42
EER92018	Sorghum	nucleus	46.77	19.4
CDY52073	Canola	nucleus	34.22	19.11
CDY46209	Canola	nucleus	27.38	19.05
CDX68129	Canola	nucleus	33.46	18.6
CDY39031	Canola	nucleus	33.46	18.41
CDX76849	Canola	nucleus	41.83	18.3
CDY46061	Canola	nucleus	41.83	18.09
Zm00001d029736_P001	Maize	nucleus, plastid	46.77	17.88
CDX77099	Canola	nucleus	30.42	17.82
CDY30566	Canola	nucleus	29.66	17.41
CDX73170	Canola	nucleus	33.84	17.32
CDY47524	Canola	nucleus	33.84	17.25
CDX85896	Canola	nucleus	32.7	17.1
CDX75604	Canola	nucleus	42.59	16.74
CDY39669	Canola	nucleus	40.68	16.59
CDY62523	Canola	nucleus	40.68	16.51
CDX69252	Canola	nucleus	41.83	16.49
CDY22463	Canola	nucleus	41.44	16.27
CDY24765	Canola	nucleus	41.06	16.19
CDY39359	Canola	nucleus	31.94	16.18
CDY40420	Canola	nucleus	38.78	16.14
CDY32069	Canola	nucleus	38.78	16.04
CDX96653	Canola	nucleus	30.8	16.01
CDY63699	Canola	nucleus	24.71	15.55
CDX84585	Canola	nucleus	39.54	15.5
CDX79646	Canola	nucleus	39.54	15.05
CDY10473	Canola	nucleus	32.32	14.78
CDY40327	Canola	nucleus	32.32	14.71
CDY69132	Canola	nucleus	31.94	14.63
CDY48107	Canola	nucleus	31.94	14.61
CDX84171	Canola	nucleus	31.94	14.29
CDY13511	Canola	nucleus	23.19	13.96
CDX68925	Canola	cytosol	9.51	13.81
CDX75085	Canola	nucleus	32.32	13.54
CDX72383	Canola	nucleus	23.19	13.5
CDX68927	Canola	nucleus	22.43	12.8
CDX75313	Canola	nucleus	22.43	12.66
CDY45321	Canola	nucleus, plastid	32.32	12.41
CDX71279	Canola	nucleus	18.25	12.37
CDY55113	Canola	nucleus	22.81	11.47
CDX80798	Canola	nucleus	22.43	11.09
CDX68906	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078I889	UniProt:A0A078I889	EnsemblPlants:CDY45383	ProteinID:CDY45383
ProteinID:CDY45383.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00081883001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF66
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EE4082	SEG:seg	:	:

Description

BnaC06g42380DBnaC06g42380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I889]

Coordinates

chrLK032623:-:57731..60752

Molecular Weight (calculated)

29692.8 Da

IEP (calculated)

5.338

GRAVY (calculated)

-0.654

Length

263 amino acids

Sequence
(BLAST)

001: MSRHFRCLKD GLVGQIQATN QALGERDEDN RWVSNAARGE TPRLRLLDQA LRQQKSYRQM SLMEAHPWRP QRGLPERAVT TLRAWLFEHF LHPYPSDVDK
101: HILARQSGLS RSQVSNWFIN ATVRLWKPMI EEMYCEETRG GEEQQMEIIN PMFVDTKPDP DQIIQVEPES LSSIVTKTGH NDNSNQGTAS CGSTFDFSSY
201: GNQAVTHTAE GGAHDVSLTL GLQTGETTLE GSVQYTPSML DDEQAQTLPY KNIMGAQSLH DMV

Best Arabidopsis Sequence Match ( AT5G41410.1 )
(BLAST)

001: MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH YNHQIFGSNS NMGMMIDFSK QQQIRMTSGS DHHHHHHQTS GGTDQNQLLE DSSSAMRLCN
101: VNNDFPSEVN DERPPQRPSQ GLSLSLSSSN PTSISLQSFE LRPQQQQQQG YSGNKSTQHQ NLQHTQMMMM MMNSHHQNNN NNNHQHHNHH QFQIGSSKYL
201: SPAQELLSEF CSLGVKESDE EVMMMKHKKK QKGKQQEEWD TSHHSNNDQH DQSATTSSKK HVPPLHSLEF MELQKRKAKL LSMLEELKRR YGHYREQMRV
301: AAAAFEAAVG LGGAEIYTAL ASRAMSRHFR CLKDGLVGQI QATSQALGER EEDNRAVSIA ARGETPRLRL LDQALRQQKS YRQMTLVDAH PWRPQRGLPE
401: RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMIEEMYCE ETRSEQMEIT NPMMIDTKPD PDQLIRVEPE SLSSIVTNPT
501: SKSGHNSTHG TMSLGSTFDF SLYGNQAVTY AGEGGPRGDV SLTLGLQRND GNGGVSLALS PVTAQGGQLF YGRDHIEEGP VQYSASMLDD DQVQNLPYRN
601: LMGAQLLHDI V

Arabidopsis Description

BEL1Homeobox protein BEL1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q38897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.