CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025758.1-P	Field mustard	nucleus	99.74	99.74
CDX83753	Canola	nucleus	43.19	88.42
CDY39359	Canola	nucleus	93.06	69.75
CDY63699	Canola	nucleus	67.87	63.16
AT1G19700.3	Thale cress	nucleus	84.32	60.97
CDX96653	Canola	nucleus	73.01	56.13
CDX68129	Canola	nucleus	65.3	53.7
CDY52073	Canola	nucleus	63.75	52.65
CDY39031	Canola	nucleus	62.98	51.26
CDX73170	Canola	nucleus	67.1	50.78
CDY47524	Canola	nucleus	66.58	50.19
CDX85896	Canola	nucleus	64.01	49.5
CDY21826	Canola	extracellular, plastid	10.28	41.67
CDX73171	Canola	nucleus	28.53	38.41
CDY47523	Canola	nucleus	28.53	38.41
CDX75307	Canola	nucleus	21.59	37.84
CDY46209	Canola	nucleus	34.7	35.71
CDY02261	Canola	nucleus	40.62	35.19
CDX89711	Canola	nucleus	40.36	34.51
CDY45383	Canola	nucleus	21.85	32.32
KRH51792	Soybean	nucleus	47.81	29.2
KRH61114	Soybean	nucleus	48.33	29.1
KRH15136	Soybean	nucleus	46.53	28.46
KRH05875	Soybean	nucleus	44.22	28.15
CDX71279	Canola	nucleus	27.51	27.58
Solyc04g080790.2.1	Tomato	nucleus	44.47	26.17
PGSC0003DMT400009610	Potato	nucleus	43.96	25.87
CDX77099	Canola	nucleus	29.31	25.39
VIT_18s0001g13150.t01	Wine grape	nucleus	45.5	25.36
CDY30566	Canola	nucleus	29.05	25.22
CDY40420	Canola	nucleus	40.62	25.0
CDY32069	Canola	nucleus	40.36	24.69
CDX84171	Canola	nucleus	37.02	24.49
CDX84585	Canola	nucleus	41.13	23.84
CDX79646	Canola	nucleus	41.13	23.15
CDX75085	Canola	nucleus	37.02	22.93
CDY45321	Canola	nucleus, plastid	39.59	22.48
CDY46061	Canola	nucleus	34.45	22.04
CDX76849	Canola	nucleus	33.93	21.96
CDY44476	Canola	nucleus	31.36	21.48
CDY40327	Canola	nucleus	31.36	21.11
CDY69132	Canola	nucleus	30.85	20.91
CDY10473	Canola	nucleus	30.85	20.87
CDY48107	Canola	nucleus	30.59	20.7
CDY39669	Canola	nucleus	34.19	20.62
CDY62523	Canola	nucleus	34.19	20.52
CDX68925	Canola	cytosol	9.51	20.44
CDY13511	Canola	nucleus	22.88	20.37
CDX68927	Canola	nucleus	23.91	20.17
CDX69252	Canola	nucleus	34.45	20.09
CDX75604	Canola	nucleus	34.45	20.03
CDY24765	Canola	nucleus	33.93	19.79
CDY22463	Canola	nucleus	33.93	19.7
CDX72383	Canola	nucleus	22.88	19.69
CDX75313	Canola	nucleus	23.39	19.53
CDY55113	Canola	nucleus	25.19	18.74
CDX80798	Canola	nucleus	24.94	18.23
CDX68906	Canola	nucleus	4.11	6.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078GV59	UniProt:A0A078GV59	EnsemblPlants:CDY29411	ProteinID:CDY29411
ProteinID:CDY29411.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00043005001	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF65	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689
UniParc:UPI0004EF4008	SEG:seg	:	:	:	:

Description

BnaA06g13850DBnaA06g13850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV59]

Coordinates

chrLK032236:+:379444..381121

Molecular Weight (calculated)

44769.3 Da

IEP (calculated)

6.650

GRAVY (calculated)

-0.965

Length

389 amino acids

Sequence
(BLAST)

001: MLLLGQSNPS SGYAGLYSNY RFNETSGGFM SSFLRSRYLK PAQNLLDEVV SVKKELNQMR KKKQKGEEDF NNGSKDTQGE LSTDSNVKLS TIERQELQNK
101: KNKLLTMVDE VDKRYNQYYH QMEALASSFE IVAGFGSAKP YTSLALNKIS CSFRSLRDAI KEQIQIIREK LGEKGGGGES LDEQQGGGER IPRLRYLDQR
201: LRQQRAFHQQ LGMVRPSWRP QRGLPENSVS VLRAWLFEHF LHPYPKESEK MMLAKQTGLS KNQVANWFIN ARVRLWKPMI EDIYKEEFGD ESELQISKSS
301: QELNSTNQDD SSSQQQQGDN NNNLGYPSAD TTNINDKPQQ EQEMNRSGDY ETLMNYQGFG LEEEYRYMGG NNQEDSRFSN AHHLHDFVV

Best Arabidopsis Sequence Match ( AT1G19700.1 )
(BLAST)

001: MAVYYTSNVG CYQQEPIFLN HQQQNQQASS SSAAASFTVT GGDTVRNEMV FIPPTTTGDV VTGNGTVSSS DLSFHDGQGL SLSLGTQISV APFHFHQYQL
101: GFTSQNPSIS VKETSPFHVD EMSVKSKEMI LLGQSDPSSG YAGNGGNGFY NNYRYNETSG GFMSSVLRSR YLKPAQNLLD EVVSVKKELN QMGKKKMKVN
201: DFNSGSKEIE GGGGELSSDS NGKSIELSTI EREELQNKKN KLLTMVDEVD KRYNQYYHQM EALASSFEIV AGLGSAKPYT SVALNRISRH FRALRDAIKE
301: QIQIVREKLG EKGGESLDEQ QGERIPRLRY LDQRLRQQRA LHQQLGMVRP AWRPQRGLPE NSVSVLRAWL FEHFLHPYPK ESEKIMLAKQ TGLSKNQVAN
401: WFINARVRLW KPMIEEMYKE EFGDESELLI SKSSQEPNST NQEDSSSQQQ QQQENNNNSN LAYSSADTTN IVFSSETKPD RVLGNDNDPQ QQQINRSSDY
501: DTLMNYHGFG VDDYRYISGS NQQESRFSNS HHLHDFVV

Arabidopsis Description

BLH10BEL1-like homeodomain protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.