CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47524	Canola	nucleus	96.3	95.93
CDY52073	Canola	nucleus	76.85	83.86
CDY39031	Canola	nucleus	77.63	83.47
CDX68129	Canola	nucleus	75.49	82.03
AT1G75410.2	Thale cress	nucleus	82.49	80.92
CDX83753	Canola	nucleus	29.77	80.53
CDX85896	Canola	nucleus	77.63	79.32
CDY29411	Canola	nucleus	50.78	67.1
CDY39359	Canola	nucleus	61.67	61.08
CDY63699	Canola	nucleus	49.22	60.53
CDX96653	Canola	nucleus	57.98	58.89
CDY21826	Canola	extracellular, plastid	8.95	47.92
CDX73171	Canola	nucleus	22.96	40.83
CDY02261	Canola	nucleus	35.6	40.76
CDY47523	Canola	nucleus	22.76	40.48
CDY46209	Canola	nucleus	29.57	40.21
CDX89711	Canola	nucleus	35.21	39.78
CDX75307	Canola	nucleus	16.54	38.29
KRH51792	Soybean	nucleus	43.77	35.32
KRH05875	Soybean	nucleus	41.63	35.02
KRH15136	Soybean	nucleus	43.0	34.75
KRH61114	Soybean	nucleus	43.39	34.52
CDY45383	Canola	nucleus	17.32	33.84
VIT_18s0001g13150.t01	Wine grape	nucleus	43.58	32.09
Solyc04g080790.2.1	Tomato	nucleus	41.25	32.07
CDX71279	Canola	nucleus	24.12	31.96
PGSC0003DMT400009610	Potato	nucleus	40.86	31.77
CDY40420	Canola	nucleus	33.27	27.06
CDY32069	Canola	nucleus	33.46	27.04
CDY45321	Canola	nucleus, plastid	35.21	26.42
CDX84171	Canola	nucleus	30.16	26.36
CDX77099	Canola	nucleus	22.76	26.06
CDX76849	Canola	nucleus	30.35	25.96
CDY30566	Canola	nucleus	22.57	25.89
CDY46061	Canola	nucleus	30.35	25.66
CDX84585	Canola	nucleus	32.88	25.19
CDX75085	Canola	nucleus	30.35	24.84
CDX79646	Canola	nucleus	32.88	24.46
CDY39669	Canola	nucleus	30.35	24.19
CDY62523	Canola	nucleus	30.35	24.07
CDY44476	Canola	nucleus	26.46	23.94
CDY22463	Canola	nucleus	31.13	23.88
CDY24765	Canola	nucleus	30.93	23.84
CDX69252	Canola	nucleus	30.74	23.69
CDX75604	Canola	nucleus	30.54	23.47
CDY40327	Canola	nucleus	25.88	23.01
CDY10473	Canola	nucleus	25.49	22.78
CDY69132	Canola	nucleus	24.71	22.13
CDY48107	Canola	nucleus	24.51	21.91
CDX68927	Canola	nucleus	19.46	21.69
CDX75313	Canola	nucleus	19.65	21.67
CDY13511	Canola	nucleus	18.09	21.28
CDY55113	Canola	nucleus	20.82	20.46
CDX80798	Canola	nucleus	20.82	20.11
CDX72383	Canola	nucleus	17.51	19.91
CDX68925	Canola	cytosol	6.81	19.34
CDX68906	Canola	nucleus	4.28	8.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078C8P1	EnsemblPlants:CDX73170	ProteinID:CDX73170	ProteinID:CDX73170.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00103658001
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF65	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI0004EAFB55	SEG:seg	:	:	:

Description

BnaC06g36180D

Coordinates

chrLK031797:-:2444878..2447819

Molecular Weight (calculated)

58557.1 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.888

Length

514 amino acids

Sequence
(BLAST)

001: MAVYYPTSVG MQPLYQESIY LNEQQQASSS SAASFSGGGG GLDIPNSDGG VRNEMVFIPP TNDVVVTGLN ESSSNDLSLQ GGGLSLSLGN QIQYHYQNLS
101: NQLNYINDEN GKSLSHHHHQ HQAEQVPSTG YSIGVGYYNN YRYETSGFVN SVLRSRYLKP TQQLLDEVVS VRKDMKQGES NKKTKNNNND KGQDFTNGSS
201: DNNTENKKLH EELSPQERQE LQSKKNKLLT MADEVDKRYN QYYHQMEAVA SSFEMVAGLG AAKPYTSVAL NRISRHFRCL RDAIKEQIQV IRGKLGEKET
301: SEEQGERIPR LRYLDQRLRQ QRALHQQLGM VRPSWRPQRG LPENSVSILR AWLFEHFLHP YPKESEKIML AKQTGLSKNQ VANWFINARV RLWKPMIEEM
401: YKEEFGDASE LLSNSNRDKN KMQETSQLKH EDSSSSQQHL QGNNNNNIAY TSAVEENLVF TDPIPDRVTT TGDYHSLMNY HQGFGVDDYN RYIGLGNQQD
501: GRFSNPHQLH DFVV

Best Arabidopsis Sequence Match ( AT1G75410.1 )
(BLAST)

001: MAVYYPNSVG MQSLYQESIY LNEQQQQQQQ ASSSSAASFS EIVSGDVRNN EMVFIPPTSD VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY
101: HYQNLSNQLS YNNLNPSTMS DENGKSLSVH QHHSDQILPS SVYNNNGNNG VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL LDEVVSVRKD LKLGNKKMKN
201: DKGQDFHNGS SDNITEDDKS QSQELSPSER QELQSKKSKL LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI
301: QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA
401: RVRLWKPMIE EMYKEEFGES AELLSNSNQD TKKMQETSQL KHEDSSSSQQ QNQGNNNNNI PYTSDAEQNL VFADPKPDRA TTGDYDSLMN YHGFGIDDYN
501: RYVGLGNQQD GRYSNPHQLH DFVV

Arabidopsis Description

BLH3BEL1-like homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.