Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68927 | Canola | nucleus | 86.49 | 48.59 |
| Bra011403.1-P | Field mustard | nucleus | 86.49 | 48.07 |
| CDX75313 | Canola | nucleus | 86.1 | 47.85 |
| CDX72383 | Canola | nucleus | 72.59 | 41.59 |
| CDY13511 | Canola | nucleus | 68.73 | 40.73 |
| AT4G32980.1 | Thale cress | nucleus | 69.88 | 38.27 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 31.66 | 13.92 |
| KRH52190 | Soybean | nucleus | 27.03 | 12.75 |
| KRH61499 | Soybean | nucleus | 27.41 | 12.35 |
| KRH05496 | Soybean | nucleus | 27.03 | 12.26 |
| CDX75307 | Canola | nucleus | 10.42 | 12.16 |
| PGSC0003DMT400076995 | Potato | nucleus | 22.78 | 10.93 |
| Solyc08g065420.2.1 | Tomato | nucleus | 22.78 | 10.55 |
| GSMUA_Achr4P02680_001 | Banana | nucleus | 20.46 | 9.15 |
| TraesCS7A01G358300.1 | Wheat | nucleus | 16.22 | 7.59 |
| TraesCS7B01G269400.1 | Wheat | nucleus | 15.83 | 7.43 |
| HORVU7Hr1G088090.4 | Barley | nucleus | 15.83 | 7.4 |
| TraesCS7D01G364500.1 | Wheat | nucleus | 15.44 | 7.27 |
| Os02t0226600-01 | Rice | nucleus | 14.67 | 7.05 |
| Zm00001d016298_P001 | Maize | nucleus | 14.67 | 6.93 |
| Os06t0562300-00 | Rice | nucleus | 13.9 | 6.61 |
| EES04785 | Sorghum | nucleus | 13.9 | 6.38 |
| CDY46209 | Canola | nucleus | 9.27 | 6.35 |
| Zm00001d046223_P006 | Maize | nucleus | 11.97 | 6.31 |
| KXG20197 | Sorghum | nucleus | 11.97 | 6.28 |
| CDX71279 | Canola | nucleus | 9.27 | 6.19 |
| CDY47523 | Canola | nucleus | 6.56 | 5.88 |
| CDX73171 | Canola | nucleus | 6.56 | 5.88 |
| CDY40420 | Canola | nucleus | 13.13 | 5.38 |
| CDY32069 | Canola | nucleus | 13.13 | 5.35 |
| CDX83753 | Canola | nucleus | 3.86 | 5.26 |
| CDX76849 | Canola | nucleus | 11.97 | 5.16 |
| CDY46061 | Canola | nucleus | 11.97 | 5.1 |
| CDY39669 | Canola | nucleus | 12.36 | 4.96 |
| CDX75085 | Canola | nucleus | 11.97 | 4.94 |
| CDY02261 | Canola | nucleus | 8.49 | 4.9 |
| CDX89711 | Canola | nucleus | 8.49 | 4.84 |
| CDY63699 | Canola | nucleus | 7.72 | 4.78 |
| CDY62523 | Canola | nucleus | 11.97 | 4.78 |
| CDX84585 | Canola | nucleus | 12.36 | 4.77 |
| CDX84171 | Canola | nucleus | 10.81 | 4.76 |
| CDY44476 | Canola | nucleus | 10.42 | 4.75 |
| CDY52073 | Canola | nucleus | 8.49 | 4.67 |
| CDX79646 | Canola | nucleus | 12.36 | 4.63 |
| CDY24765 | Canola | nucleus | 11.58 | 4.5 |
| CDY22463 | Canola | nucleus | 11.58 | 4.48 |
| CDX68129 | Canola | nucleus | 8.11 | 4.44 |
| CDY39031 | Canola | nucleus | 8.11 | 4.39 |
| CDX85896 | Canola | nucleus | 8.49 | 4.37 |
| CDX96653 | Canola | nucleus | 8.49 | 4.35 |
| CDX73170 | Canola | nucleus | 8.49 | 4.28 |
| CDY30566 | Canola | nucleus | 7.34 | 4.24 |
| CDY45321 | Canola | nucleus, plastid | 11.2 | 4.23 |
| CDX77099 | Canola | nucleus | 7.34 | 4.23 |
| CDY55113 | Canola | nucleus | 8.49 | 4.21 |
| CDX75604 | Canola | nucleus | 10.81 | 4.19 |
| CDY69132 | Canola | nucleus | 9.27 | 4.18 |
| CDY48107 | Canola | nucleus | 9.27 | 4.17 |
| CDX80798 | Canola | nucleus | 8.49 | 4.14 |
| CDY29411 | Canola | nucleus | 6.18 | 4.11 |
| CDY47524 | Canola | nucleus | 8.11 | 4.07 |
| CDX69252 | Canola | nucleus | 10.42 | 4.05 |
| CDY39359 | Canola | nucleus | 8.11 | 4.05 |
| CDY10473 | Canola | nucleus | 8.88 | 4.0 |
| CDY40327 | Canola | nucleus | 8.88 | 3.98 |
| Zm00001d002249_P001 | Maize | nucleus | 4.63 | 3.41 |
| CDX68925 | Canola | cytosol | 2.32 | 3.31 |
| CDY21826 | Canola | extracellular, plastid | 1.16 | 3.12 |
| CDY45383 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX68906 | EnsemblPlantsGene:GSBRNA2T00130639001 | InterPro:POX_dom | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF92 | PFAM:PF07526 |
| ProteinID:CDX68906 | ProteinID:CDX68906.1 | SEG:seg | SMART:SM00574 | UniParc:UPI0004EE44C7 | MapMan:35.1 |
Description
BnaC01g05470D
Coordinates
chrLK031789:+:1847598..1848377
Molecular Weight (calculated)
28692.3 Da
IEP (calculated)
4.468
GRAVY (calculated)
-0.358
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMIPSREDS TSFSTMLPWN SIRQDPLQMG GFEIFNSFLT NKYSSSTSRS INVQETSFEA MAPPPPPLQP MDHLRPYDVP SNNMWSLGDN SDFHAYPCVE
101: GVVGPSIPIL STFDEENFPR NEPSLSLAAD VSDECSEISL CAATKSTRIT SEHASSSSKD VSNNVSQVIF GSKYLHSVQE ILSHFATYSL NGLETNPQCY
201: FSSRGTESEG TNSVFTSCYE NLNEFLGGGS QRQALEAKKT HLLDLLQMGI YIHIHIYIS
101: GVVGPSIPIL STFDEENFPR NEPSLSLAAD VSDECSEISL CAATKSTRIT SEHASSSSKD VSNNVSQVIF GSKYLHSVQE ILSHFATYSL NGLETNPQCY
201: FSSRGTESEG TNSVFTSCYE NLNEFLGGGS QRQALEAKKT HLLDLLQMGI YIHIHIYIS
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Arabidopsis Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.