Factsheet for Bra011403.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006085.1-P
Bra027006.1-P
Bra027050.1-P
Bra036636.1-P
Bra040948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	Bra027050.1-P	AT1G62360.1	15781858
AT4G32980.1	Bra027050.1-P	AT1G62360.1	16513846
AT4G32980.1	Bra027050.1-P	AT1G62360.1	17785527
AT4G32980.1	Bra027006.1-P	AT1G62990.1	15781858
AT4G32980.1	Bra036636.1-P	AT1G62990.1	15781858
AT4G32980.1	Bra040948.1-P	AT5G01840.1	15781858
AT4G32980.1	Bra006085.1-P	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75313	Canola	nucleus	99.14	99.14
CDX75307	Canola	nucleus	46.57	97.75
CDX68906	Canola	nucleus	48.07	86.49
Bra037031.1-P	Field mustard	nucleus	77.04	82.15
AT4G32980.1	Thale cress	nucleus	77.47	76.32
VIT_04s0008g00880.t01	Wine grape	nucleus	45.92	36.33
KRH52190	Soybean	nucleus	42.27	35.88
KRH05496	Soybean	nucleus	42.7	34.85
KRH61499	Soybean	nucleus	42.06	34.09
PGSC0003DMT400076995	Potato	nucleus	39.27	33.89
Solyc08g065420.2.1	Tomato	nucleus	39.7	33.09
Bra015844.1-P	Field mustard	nucleus	17.38	28.03
GSMUA_Achr4P02680_001	Banana	nucleus	33.48	26.94
Zm00001d046223_P006	Maize	nucleus	25.32	24.03
Os02t0226600-01	Rice	nucleus	27.25	23.56
TraesCS7B01G269400.1	Wheat	nucleus	27.9	23.55
TraesCS7A01G358300.1	Wheat	nucleus	27.9	23.51
KXG20197	Sorghum	nucleus	24.89	23.48
TraesCS7D01G364500.1	Wheat	nucleus	27.68	23.45
Os06t0562300-00	Rice	nucleus	27.25	23.3
Bra025758.1-P	Field mustard	nucleus	19.31	23.14
Zm00001d016298_P001	Maize	nucleus	27.04	22.99
Bra013075.1-P	Field mustard	nucleus	20.6	22.54
EES04785	Sorghum	nucleus	26.82	22.16
Bra032147.1-P	Field mustard	nucleus	15.02	21.88
Bra010577.1-P	Field mustard	nucleus	15.24	21.58
Bra013076.1-P	Field mustard	nucleus	20.82	21.56
HORVU7Hr1G088090.4	Barley	nucleus	24.89	20.94
Bra011713.1-P	Field mustard	nucleus	15.24	20.82
Bra008197.1-P	Field mustard	nucleus	20.6	20.56
Bra003753.1-P	Field mustard	nucleus	20.6	20.3
Zm00001d002249_P001	Maize	nucleus	15.24	20.17
Bra017666.1-P	Field mustard	nucleus	22.53	19.89
Bra034335.1-P	Field mustard	nucleus	18.88	19.64
Bra016497.1-P	Field mustard	nucleus	20.82	19.4
Bra001976.1-P	Field mustard	nucleus	18.45	19.37
Bra015845.1-P	Field mustard	nucleus	21.03	18.88
Bra017277.1-P	Field mustard	nucleus	25.11	17.33
Bra005310.1-P	Field mustard	nucleus	22.96	17.04
Bra039212.1-P	Field mustard	nucleus	21.89	16.78
Bra023045.1-P	Field mustard	nucleus	23.39	16.69
Bra025497.1-P	Field mustard	nucleus	20.39	16.02
Bra028883.1-P	Field mustard	nucleus	17.81	14.21
Bra005703.1-P	Field mustard	nucleus	17.38	14.21
Bra009618.1-P	Field mustard	nucleus	17.6	13.99

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	EnsemblPlantsGene:Bra011403	EnsemblPlants:Bra011403.1	EnsemblPlants:Bra011403.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4D4J9
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF92
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000254606A	SEG:seg	:

Description

AT4G32980 (E=1e-179) ATH1 | ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA01:+:2324138..2325816

Molecular Weight (calculated)

53019.7 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.513

Length

466 amino acids

Sequence
(BLAST)

001: MDNISTYSSL DNVITNPNHL LMDLIPSRED STSFPTMLPW NSIRQDPLQM GGFDIFNSFL TNKYLSSTSR STNVHETSFE AMAPPLPPPS LHPMEHLRPY
101: DDPSNNMWSL GENSEFHAYP FIEGVVGPSE PIISTFGEEG FPRNELSLSL ATDVSNESSE ISLCAATKST RITSEQASSS SKHVSNNVSQ VIFGSKYLHS
201: VQEILSHFAT YSLNGIETNP QCYFSSRGTE SEGTNSAFVS CYENLNEFLD GGSQRRALEA KKTHLLDLLQ MVDDRYSHCV DEIHTVVSAF HAATELDPQL
301: HTRFALQTVS FLYKNLRERI SKKILMMGTV LERGKEKSQE DSIFHQHCLL QQLKRKNHQI WRPQRGLPEK SVSVLRTWMF QNFLHPYPKD SEKHLLAIRS
401: GLTRSQVSNW FINARVRLWK PMIEDMYAEM NKRKLSNTPL QGGNGGSFIR VPKSVMMSQE RDKIRE

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.