Factsheet for GSMUA_Achr4P02680_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P03660_001
GSMUA_Achr1P09570_001
GSMUA_Achr1P19120_001
GSMUA_Achr2P09660_001
GSMUA_Achr3P12130_001
GSMUA_Achr3P13490_001
GSMUA_Achr9P09770_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	GSMUA_Achr1P09570_001	AT1G26260.1	15781858
AT4G32980.1	GSMUA_Achr1P19120_001	AT1G26260.1	15781858
AT4G32980.1	GSMUA_Achr2P09660_001	AT1G26260.1	15781858
AT4G32980.1	GSMUA_Achr3P12130_001	AT1G26260.1	15781858
AT4G32980.1	GSMUA_Achr3P13490_001	AT1G26260.1	15781858
AT4G32980.1	GSMUA_Achr9P09770_001	AT1G26260.1	15781858
AT4G32980.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75307	Canola	nucleus	18.65	48.65
GSMUA_Achr5P03140_001	Banana	nucleus	6.22	46.75
KRH52190	Soybean	nucleus	33.16	34.97
Bra037031.1-P	Field mustard	nucleus	26.25	34.78
CDY13511	Canola	nucleus	26.25	34.78
VIT_04s0008g00880.t01	Wine grape	nucleus	35.06	34.47
CDX68927	Canola	nucleus	27.12	34.06
KRH05496	Soybean	nucleus	33.51	33.98
GSMUA_AchrUn_...	Banana	nucleus	34.72	33.9
Bra011403.1-P	Field mustard	nucleus	26.94	33.48
CDX75313	Canola	nucleus	26.94	33.48
CDX72383	Canola	nucleus	26.08	33.41
PGSC0003DMT400076995	Potato	nucleus	30.57	32.78
AT4G32980.1	Thale cress	nucleus	26.77	32.77
KRH61499	Soybean	nucleus	32.3	32.52
Solyc08g065420.2.1	Tomato	nucleus	31.09	32.2
GSMUA_Achr2P19430_001	Banana	nucleus	30.05	32.16
GSMUA_Achr2P06410_001	Banana	nucleus	7.6	30.34
CDX68925	Canola	cytosol	8.81	28.18
GSMUA_Achr10P...	Banana	nucleus	4.49	25.49
GSMUA_Achr10P...	Banana	nucleus	17.62	24.4
GSMUA_Achr1P03680_001	Banana	nucleus	12.26	23.99
GSMUA_Achr11P...	Banana	plastid	10.88	23.95
GSMUA_Achr3P29230_001	Banana	nucleus	17.79	22.79
GSMUA_Achr4P04480_001	Banana	nucleus	16.41	22.57
GSMUA_Achr1P23300_001	Banana	extracellular	16.75	22.45
GSMUA_Achr4P07450_001	Banana	nucleus	11.4	21.78
GSMUA_Achr6P07130_001	Banana	nucleus	18.31	21.59
GSMUA_Achr4P14670_001	Banana	nucleus	11.05	21.55
GSMUA_Achr5P08840_001	Banana	nucleus	11.74	21.45
CDX68906	Canola	nucleus	9.15	20.46
GSMUA_Achr1P26900_001	Banana	nucleus	13.99	20.35
GSMUA_Achr9P21580_001	Banana	nucleus	19.17	20.33
GSMUA_Achr4P06630_001	Banana	nucleus	19.0	19.43
GSMUA_Achr5P03130_001	Banana	cytosol	11.05	19.16
GSMUA_Achr4P12180_001	Banana	nucleus	16.93	18.74
GSMUA_Achr1P06400_001	Banana	nucleus	16.58	18.6
GSMUA_Achr6P18180_001	Banana	nucleus	20.21	18.45
GSMUA_Achr4P13590_001	Banana	nucleus	18.13	18.45
GSMUA_Achr2P06420_001	Banana	nucleus	11.74	18.43
GSMUA_Achr2P04310_001	Banana	nucleus	16.23	16.85
GSMUA_Achr9P18740_001	Banana	nucleus	16.58	16.67
GSMUA_Achr7P14960_001	Banana	nucleus	12.61	16.59
GSMUA_Achr5P07020_001	Banana	nucleus	13.3	14.67
GSMUA_Achr7P27440_001	Banana	nucleus	16.75	14.18
GSMUA_Achr10P...	Banana	nucleus	16.23	12.47
GSMUA_Achr11P...	Banana	plastid	7.77	11.03
GSMUA_Achr10P...	Banana	plastid	1.73	10.31

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G02680_001	EnsemblPlants:GSMUA_Achr4P02680_001
EnsemblPlants:GSMUA_Achr4T02680_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0SKI5
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF92
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000296A9A6	SEG:seg	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G02680_001]

Coordinates

chr4:+:2268493..2271649

Molecular Weight (calculated)

65187.6 Da

IEP (calculated)

4.980

GRAVY (calculated)

-0.458

Length

579 amino acids

Sequence
(BLAST)

001: MEKDILNAGL SMTDHNHVSM DTIASLFFSG STSQPGIKDQ NFHEQIMSGN TLFPSLQEES HNNVSPAYYG GFLTPVGYAT IDDCVGKNEL EEQTEVPLLS
101: SMPLQYNVAD TNGLEEDFST VNLSSSASFP LQEMKISMPR NNFNVLAMQN VTEVLASKTG GSLNKQFDYV RYSDETLKHQ VPSSTTSIVH PSCYIKEFSK
201: PELCSDILTP KFLSYYTPSN ELSLSLGSSR PSMSKMLDIS DQFSEINCSG IDQVPPKNSR YCSDELGEYS LVVNSLHDVQ LRTGTELGND QHCPGIQEFS
301: TCSGPVNLYG ILTSRYFSVT QQILSEVSSY IQLDDSLSGI SFSSSCSSER EFVITRSMDF QSSFGDIDSQ DHVEKLQALE TTREKSQLLT MLQLVDLKYK
401: QCLEEVNGVI SLYDDATKSA VPQFSSGFAL HTISMLYKNL RERITRSILL VNQQSERKEG RVRAIESSFL QRHWALQQVR RNDWRPKRGL PEKSVSVLRA
501: WMFQNFTHPY PSDGEKNLLA LRSGLTRSQV SNWFINARVR LWKPMIEEMY LELGKRNGGE DGAEEECRSH ETTKVRESS

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.