Factsheet for GSMUA_Achr3P13490_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P03680_001
GSMUA_Achr1P06400_001
GSMUA_Achr2P04310_001
GSMUA_Achr4P02680_001
GSMUA_Achr4P04480_001
GSMUA_Achr4P12180_001
GSMUA_Achr5P07020_001
GSMUA_Achr7P14960_001
GSMUA_Achr9P18740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26260.1	GSMUA_Achr4P02680_001	AT4G32980.1	15781858
AT1G26260.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr5P07020_001	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr7P14960_001	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr1P03680_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr1P06400_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr2P04310_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr4P04480_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr4P12180_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr9P18740_001	AT5G41410.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19120_001	Banana	nucleus	57.11	58.04
GSMUA_Achr3P12130_001	Banana	nucleus	49.31	56.43
GSMUA_Achr8P09170_001	Banana	nucleus	13.53	48.76
GSMUA_Achr6P36210_001	Banana	nucleus	26.61	42.18
GSMUA_Achr1P09570_001	Banana	nucleus	33.49	42.07
GSMUA_Achr6P16480_001	Banana	nucleus	15.83	42.07
GSMUA_Achr9P18510_001	Banana	nucleus	29.13	40.71
GSMUA_Achr9P28060_001	Banana	nucleus	28.44	40.52
GSMUA_Achr1P27010_001	Banana	nucleus	20.18	38.94
GSMUA_Achr10P...	Banana	nucleus	16.28	38.59
GSMUA_Achr3P10600_001	Banana	nucleus	39.68	37.53
GSMUA_Achr5P24960_001	Banana	nucleus	15.14	35.87
GSMUA_Achr8P24490_001	Banana	nucleus	32.8	34.54
GSMUA_AchrUn_...	Banana	nucleus	22.25	34.28
GSMUA_Achr2P09660_001	Banana	nucleus	24.77	34.07
GSMUA_AchrUn_...	Banana	nucleus	18.81	33.88
GSMUA_Achr9P11020_001	Banana	nucleus	19.72	33.33
AT1G26260.1	Thale cress	nucleus	26.38	29.49
GSMUA_Achr10P...	Banana	nucleus	18.58	29.24
GSMUA_Achr9P01040_001	Banana	nucleus	18.58	28.72
GSMUA_Achr9P09770_001	Banana	nucleus	19.95	27.27
GSMUA_Achr6P09050_001	Banana	nucleus	19.5	26.9
GSMUA_Achr9P07330_001	Banana	nucleus	22.02	26.52
GSMUA_Achr3P02490_001	Banana	nucleus	24.54	25.36
GSMUA_Achr7P01750_001	Banana	nucleus	19.5	25.3
GSMUA_Achr1P19610_001	Banana	nucleus	21.1	25.21
GSMUA_Achr6P27780_001	Banana	nucleus	29.36	24.52
GSMUA_Achr4P19330_001	Banana	nucleus	21.56	24.29
GSMUA_Achr9P22300_001	Banana	nucleus	16.05	24.14
GSMUA_Achr7P06330_001	Banana	nucleus	19.95	23.77
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	19.95	23.71
GSMUA_Achr2P21280_001	Banana	nucleus	26.38	22.86
GSMUA_Achr2P21460_001	Banana	nucleus	19.72	22.22
GSMUA_Achr10P...	Banana	nucleus	19.95	21.64
GSMUA_Achr10P...	Banana	nucleus	20.87	21.51
GSMUA_Achr2P06090_001	Banana	nucleus	22.48	20.5
GSMUA_Achr7P02770_001	Banana	nucleus	22.48	20.08
GSMUA_Achr4P16120_001	Banana	nucleus	20.87	19.91
GSMUA_Achr3P17290_001	Banana	plastid	25.46	19.47
GSMUA_Achr7P22770_001	Banana	nucleus	19.72	19.46
GSMUA_Achr10P...	Banana	mitochondrion	25.92	17.17

Protein Annotations

EnsemblPlants:GSMUA_Achr3P13490_001	EnsemblPlants:GSMUA_Achr3T13490_001	EnsemblPlantsGene:GSMUA_Achr3G13490_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296DC82	UniProt:M0SEB6	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Putative helix-loop-helix DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G13490_001]

Coordinates

chr3:+:10853985..10856133

Molecular Weight (calculated)

47492.0 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.536

Length

436 amino acids

Sequence
(BLAST)

001: MDTNENNKFE LEKNHGNHLS NHSSGISDHW QFNTSTSSMA AGLMNLVTSS PYPSASEMEP FTPGLWNHHA ANCVPIGEPV AVSSGGMLPS TVPGISSPRL
101: PHFPAETALV ERAARFPCFS GRNFSGMNLL FRPSESMVPY TNAMEDVTEI QLGKTEMNTT VQNGVLLPVD NASVNRGLIT NQIDCESREA NFTKGGQEGN
201: TDSSDAARNS SPKKRRTTQK EEVKRGPQSS SETTKETTEG KQKVDQNSSE HSGKNGKYSS EAAKGDCVHV RARRGQATNS HSLAERVRRE KISERMKYLQ
301: ELVPGCSKVT GKAVMLDEII NYVQSLQSQV EFLSMKLAAV NPQPEFSTEG LLAKNLLHSH GGCSSATGLP QEMIYPQVSL YPSQQGLMHS AISAIINPSE
401: ALRRDMNAQL STTSVYKESS LQVILLIRPL ILPDLG

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.