Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P18570_001 | nucleus |
| GSMUA_AchrUn_... | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | GSMUA_Achr5P18570_001 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | GSMUA_AchrUn_... | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 72.15 | 56.72 |
| GSMUA_Achr8P09170_001 | Banana | nucleus | 19.94 | 52.07 |
| GSMUA_Achr6P16480_001 | Banana | nucleus | 23.1 | 44.51 |
| GSMUA_Achr10P... | Banana | nucleus | 24.05 | 41.3 |
| GSMUA_Achr5P24960_001 | Banana | nucleus | 21.52 | 36.96 |
| GSMUA_Achr1P27010_001 | Banana | nucleus | 26.27 | 36.73 |
| Zm00001d051569_P001 | Maize | nucleus | 39.24 | 36.26 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 40.19 | 36.18 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 39.87 | 34.9 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 38.92 | 34.75 |
| Os02t0705500-01 | Rice | nucleus | 38.29 | 33.52 |
| EES05656 | Sorghum | nucleus | 37.97 | 33.43 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 39.87 | 32.64 |
| CDX76288 | Canola | nucleus | 25.63 | 32.4 |
| PGSC0003DMT400058169 | Potato | nucleus | 27.22 | 32.09 |
| Zm00001d017778_P001 | Maize | nucleus | 38.92 | 32.03 |
| Solyc03g034000.2.1 | Tomato | nucleus | 26.27 | 31.2 |
| GSMUA_Achr6P36210_001 | Banana | nucleus | 26.9 | 30.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.42 | 30.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.22 | 30.39 |
| Bra034636.1-P | Field mustard | nucleus | 26.9 | 30.25 |
| GSMUA_Achr9P11020_001 | Banana | nucleus | 24.68 | 30.23 |
| PGSC0003DMT400040021 | Potato | nucleus | 28.8 | 30.03 |
| GSMUA_Achr2P09660_001 | Banana | nucleus | 30.06 | 29.97 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 28.8 | 29.84 |
| CDY17466 | Canola | nucleus | 25.95 | 29.5 |
| Bra011540.1-P | Field mustard | nucleus | 30.38 | 29.27 |
| CDX75440 | Canola | nucleus | 30.38 | 29.18 |
| GSMUA_Achr10P... | Banana | nucleus | 25.0 | 28.52 |
| GSMUA_Achr9P01040_001 | Banana | nucleus | 25.32 | 28.37 |
| AT4G34530.1 | Thale cress | nucleus | 29.75 | 28.06 |
| CDX69067 | Canola | nucleus | 30.06 | 27.94 |
| KRH51523 | Soybean | nucleus | 33.86 | 27.44 |
| GSMUA_Achr9P28060_001 | Banana | nucleus | 25.95 | 26.8 |
| GSMUA_Achr9P18510_001 | Banana | nucleus | 26.27 | 26.6 |
| KRH24463 | Soybean | nucleus | 32.91 | 25.74 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 29.75 | 25.68 |
| GSMUA_Achr7P01750_001 | Banana | nucleus | 26.9 | 25.3 |
| GSMUA_Achr9P07330_001 | Banana | nucleus | 28.8 | 25.14 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 35.44 | 24.72 |
| KRH29448 | Soybean | nucleus | 32.91 | 24.7 |
| KRH60839 | Soybean | nucleus | 33.23 | 24.42 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 27.53 | 23.84 |
| PGSC0003DMT400001888 | Potato | nucleus | 33.23 | 23.76 |
| Solyc01g109700.2.1 | Tomato | nucleus | 32.59 | 23.73 |
| GSMUA_Achr8P24490_001 | Banana | nucleus | 30.06 | 22.95 |
| GSMUA_Achr4P17570_001 | Banana | golgi, vacuole | 26.58 | 22.89 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 20.89 | 22.76 |
| GSMUA_Achr3P12130_001 | Banana | nucleus | 27.22 | 22.57 |
| GSMUA_Achr3P02490_001 | Banana | nucleus | 30.06 | 22.51 |
| GSMUA_Achr1P09570_001 | Banana | nucleus | 24.68 | 22.48 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 27.22 | 22.22 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 25.63 | 22.13 |
| GSMUA_Achr9P09770_001 | Banana | nucleus | 22.15 | 21.94 |
| GSMUA_Achr10P... | Banana | nucleus | 28.48 | 21.28 |
| GSMUA_Achr7P22770_001 | Banana | nucleus | 29.75 | 21.27 |
| GSMUA_Achr2P21460_001 | Banana | nucleus | 25.63 | 20.93 |
| GSMUA_Achr6P27780_001 | Banana | nucleus | 34.18 | 20.69 |
| GSMUA_Achr7P02770_001 | Banana | nucleus | 31.33 | 20.29 |
| GSMUA_Achr1P19120_001 | Banana | nucleus | 27.22 | 20.05 |
| GSMUA_Achr4P16120_001 | Banana | nucleus | 28.48 | 19.69 |
| GSMUA_Achr2P21280_001 | Banana | nucleus | 31.33 | 19.68 |
| GSMUA_Achr3P13490_001 | Banana | nucleus | 26.9 | 19.5 |
| GSMUA_Achr3P10600_001 | Banana | nucleus | 28.16 | 19.31 |
| GSMUA_Achr2P06090_001 | Banana | nucleus | 29.11 | 19.25 |
| GSMUA_Achr3P17290_001 | Banana | plastid | 31.65 | 17.54 |
| GSMUA_Achr10P... | Banana | mitochondrion | 32.59 | 15.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P09050_001 | EnsemblPlants:GSMUA_Achr6T09050_001 | EnsemblPlantsGene:GSMUA_Achr6G09050_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000294C30A | UniProt:M0T5F4 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : |
Description
basic helix-loop-helix, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G09050_001]
Coordinates
chr6:-:6000979..6002927
Molecular Weight (calculated)
34120.9 Da
IEP (calculated)
8.005
GRAVY (calculated)
-0.639
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSFQALPS GCGGEKNANH GDVHGSIDCF SNGWPDLANI RYPVHGAANV EETSITNVSS NSSRKRKADK SPRSKEKENG GGGKGDSSCK RIKEETGGGA
101: TSETGQPNKK EAASGDASKK NDKPPKTDCI HVRARRGQAT DSHSLAERVR RERISQRMKY LQDLVPGCSK ITGKAGMLDE IINYVQSLQR QVEFLSMKLA
201: TASPLMDINI DNIFGREINP SCKSGSTAMI GMSSELLDQS YLRFDSLQHP HPCSGLDTFM DSSDLVLRQN VNPPVAVPDA SFGSSFDVNG CSVWSTNLQS
301: LYGVDFQQGR GAALPF
101: TSETGQPNKK EAASGDASKK NDKPPKTDCI HVRARRGQAT DSHSLAERVR RERISQRMKY LQDLVPGCSK ITGKAGMLDE IINYVQSLQR QVEFLSMKLA
201: TASPLMDINI DNIFGREINP SCKSGSTAMI GMSSELLDQS YLRFDSLQHP HPCSGLDTFM DSSDLVLRQN VNPPVAVPDA SFGSSFDVNG CSVWSTNLQS
301: LYGVDFQQGR GAALPF
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.