Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400044219 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | PGSC0003DMT400044219 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g109700.2.1 | Tomato | nucleus | 91.4 | 93.09 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 52.71 | 51.43 |
| KRH51523 | Soybean | nucleus | 42.08 | 47.69 |
| KRH29448 | Soybean | nucleus | 42.76 | 44.89 |
| KRH24463 | Soybean | nucleus | 40.5 | 44.31 |
| KRH60839 | Soybean | nucleus | 42.08 | 43.26 |
| PGSC0003DMT400040021 | Potato | nucleus | 28.05 | 40.92 |
| PGSC0003DMT400004855 | Potato | nucleus | 20.36 | 40.72 |
| PGSC0003DMT400058169 | Potato | nucleus | 23.98 | 39.55 |
| CDX76288 | Canola | nucleus | 20.81 | 36.8 |
| CDY17466 | Canola | nucleus | 22.17 | 35.25 |
| Bra034636.1-P | Field mustard | nucleus | 22.4 | 35.23 |
| AT4G34530.1 | Thale cress | nucleus | 26.24 | 34.63 |
| Bra011540.1-P | Field mustard | nucleus | 25.57 | 34.45 |
| CDX75440 | Canola | nucleus | 25.34 | 34.04 |
| PGSC0003DMT400058204 | Potato | nucleus | 20.59 | 33.7 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 23.76 | 33.23 |
| CDX69067 | Canola | nucleus | 25.34 | 32.94 |
| PGSC0003DMT400062844 | Potato | nucleus | 21.49 | 32.65 |
| PGSC0003DMT400069568 | Potato | nucleus | 19.68 | 30.63 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 24.43 | 30.51 |
| EES05656 | Sorghum | nucleus | 24.66 | 30.36 |
| Zm00001d051569_P001 | Maize | nucleus | 23.3 | 30.12 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 24.43 | 29.92 |
| Os02t0705500-01 | Rice | nucleus | 24.43 | 29.92 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 23.76 | 29.91 |
| GSMUA_Achr10P... | Banana | nucleus | 26.02 | 28.61 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 24.66 | 28.24 |
| Zm00001d017778_P001 | Maize | nucleus | 24.43 | 28.12 |
| PGSC0003DMT400021130 | Potato | nucleus | 22.85 | 28.06 |
| PGSC0003DMT400051137 | Potato | nucleus | 21.27 | 27.81 |
| PGSC0003DMT400042791 | Potato | nucleus | 27.6 | 27.79 |
| PGSC0003DMT400012591 | Potato | nucleus | 23.76 | 27.49 |
| PGSC0003DMT400011651 | Potato | nucleus | 24.89 | 26.63 |
| PGSC0003DMT400053639 | Potato | nucleus | 28.96 | 26.02 |
| PGSC0003DMT400051980 | Potato | mitochondrion, nucleus | 25.57 | 24.2 |
| PGSC0003DMT400004830 | Potato | nucleus | 24.21 | 23.11 |
| PGSC0003DMT400050585 | Potato | nucleus | 27.15 | 23.08 |
| PGSC0003DMT400022704 | Potato | nucleus | 27.15 | 22.43 |
Protein Annotations
| EntrezGene:102589204 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EMBL:KY852490 |
| UniProt:M0ZJ90 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400000711 | PGSC:PGSC0003DMG400000711 | EnsemblPlants:PGSC0003DMT400001888 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002962F78 | RefSeq:XP_006365113.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
Basic helix-loop-helix protein BHLH7 [Source:PGSC_GENE;Acc:PGSC0003DMG400000711]
Coordinates
chr1:+:86038141..86041879
Molecular Weight (calculated)
49695.2 Da
IEP (calculated)
5.824
GRAVY (calculated)
-0.787
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIALPEMLH NNTTSNGGNG SSVLERQPAR MKWHQEQVQQ QEMSYFNGQN DQLMSSFHQT SEAQQFHGLI NVNDQSLNEL VTRAIKPDPC MENNWDDFGT
101: TDNNGFGYVP VGVGHGGMSH PTEMNYAISR TTSCPPTMAD NAVKSKETML SSNRGSENFK KRKADKNQHL KEVAEEETKD KKLKECIEEG DDSSKVTTEK
201: KSNKRSANNS SNSKENSDTS KEKSKITDDK KLDYIHVRAR RGQATDSHSL AERVRREKIS ERMRFLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL
301: SMKLAAVNPR LDIDVDNFFN KDIFATSTST FSTVGAGTSS EMLSMAQRQF NSLQQIMSSS GLEMDILNLN EMALRRTTSA PVPIPEMFLD SSSINQVQSF
401: QTWDTDLDNM YAMELQQGRS AQFFPHPCTG FAEAGHDLKM EM
101: TDNNGFGYVP VGVGHGGMSH PTEMNYAISR TTSCPPTMAD NAVKSKETML SSNRGSENFK KRKADKNQHL KEVAEEETKD KKLKECIEEG DDSSKVTTEK
201: KSNKRSANNS SNSKENSDTS KEKSKITDDK KLDYIHVRAR RGQATDSHSL AERVRREKIS ERMRFLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL
301: SMKLAAVNPR LDIDVDNFFN KDIFATSTST FSTVGAGTSS EMLSMAQRQF NSLQQIMSSS GLEMDILNLN EMALRRTTSA PVPIPEMFLD SSSINQVQSF
401: QTWDTDLDNM YAMELQQGRS AQFFPHPCTG FAEAGHDLKM EM
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.