Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | CDX86636 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDX89827 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY15503 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY18229 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75440 | Canola | nucleus | 88.53 | 91.49 |
| CDY17466 | Canola | nucleus | 57.35 | 70.14 |
| AT4G34530.1 | Thale cress | nucleus | 66.47 | 67.46 |
| CDX76288 | Canola | nucleus | 49.12 | 66.8 |
| CDY25986 | Canola | plastid | 23.24 | 36.24 |
| CDY33821 | Canola | mitochondrion, plastid | 20.29 | 35.2 |
| CDY72360 | Canola | cytosol | 15.0 | 34.0 |
| CDY18099 | Canola | nucleus | 22.06 | 33.63 |
| CDX98249 | Canola | nucleus | 26.76 | 32.5 |
| CDY05670 | Canola | nucleus | 24.41 | 32.17 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 12.94 | 31.88 |
| CDY08308 | Canola | nucleus | 27.35 | 31.85 |
| CDY37979 | Canola | nucleus | 24.71 | 31.58 |
| CDX67710 | Canola | nucleus | 29.71 | 31.37 |
| CDX93427 | Canola | nucleus | 24.71 | 31.34 |
| CDX86296 | Canola | nucleus | 24.71 | 31.0 |
| CDY64034 | Canola | nucleus | 27.94 | 30.94 |
| CDX79883 | Canola | nucleus | 27.35 | 30.79 |
| CDY45806 | Canola | nucleus | 26.18 | 30.38 |
| CDY53497 | Canola | nucleus | 27.35 | 30.1 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 27.94 | 30.06 |
| CDX84885 | Canola | nucleus | 26.18 | 29.97 |
| CDY31048 | Canola | nucleus | 27.06 | 29.3 |
| KRH51523 | Soybean | nucleus | 33.53 | 29.23 |
| CDY61581 | Canola | plastid | 15.59 | 28.96 |
| CDX88966 | Canola | nucleus | 28.24 | 28.92 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 29.71 | 28.77 |
| KRH24463 | Soybean | nucleus | 34.12 | 28.71 |
| CDX87255 | Canola | nucleus, plastid | 23.53 | 28.57 |
| Zm00001d051569_P001 | Maize | nucleus | 28.53 | 28.36 |
| CDY06074 | Canola | nucleus | 29.41 | 28.09 |
| KRH29448 | Soybean | nucleus | 34.71 | 28.03 |
| CDY56230 | Canola | nucleus | 27.35 | 27.93 |
| EES05656 | Sorghum | nucleus | 29.41 | 27.86 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 28.82 | 27.68 |
| CDY20659 | Canola | nucleus | 27.06 | 27.63 |
| CDX85122 | Canola | nucleus | 26.76 | 27.49 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 29.12 | 27.42 |
| CDX71994 | Canola | nucleus | 29.12 | 27.42 |
| CDX77488 | Canola | nucleus | 26.47 | 27.36 |
| Os02t0705500-01 | Rice | nucleus | 28.82 | 27.15 |
| CDY22605 | Canola | nucleus | 27.65 | 26.63 |
| KRH60839 | Soybean | nucleus | 33.53 | 26.51 |
| CDY63738 | Canola | nucleus | 26.47 | 26.32 |
| CDY53834 | Canola | nucleus | 26.76 | 26.22 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 29.71 | 26.17 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 34.41 | 25.83 |
| Zm00001d017778_P001 | Maize | nucleus | 28.82 | 25.52 |
| PGSC0003DMT400001888 | Potato | nucleus | 32.94 | 25.34 |
| Solyc01g109700.2.1 | Tomato | nucleus | 31.76 | 24.88 |
| GSMUA_Achr10P... | Banana | nucleus | 27.94 | 23.63 |
| CDY61420 | Canola | extracellular | 9.41 | 23.53 |
| CDY47665 | Canola | cytosol | 17.65 | 23.35 |
| CDY51061 | Canola | nucleus | 29.12 | 22.86 |
| CDY57925 | Canola | nucleus | 26.47 | 22.61 |
| CDY35923 | Canola | nucleus, plastid | 29.12 | 22.1 |
| CDY45835 | Canola | nucleus | 29.41 | 22.08 |
| CDX81575 | Canola | nucleus | 30.0 | 21.47 |
| CDX86297 | Canola | nucleus | 30.88 | 21.43 |
| CDY28061 | Canola | nucleus | 28.53 | 21.41 |
| CDX85347 | Canola | nucleus | 30.88 | 21.38 |
| CDX95974 | Canola | nucleus | 30.0 | 21.29 |
| CDY33568 | Canola | nucleus | 30.0 | 21.16 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078BXK2 | EnsemblPlants:CDX69067 | ProteinID:CDX69067 |
| ProteinID:CDX69067.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00130837001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE0721 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC01g03860D
Coordinates
chrLK031789:+:2741756..2743942
Molecular Weight (calculated)
38496.0 Da
IEP (calculated)
5.857
GRAVY (calculated)
-0.592
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMTMMMNGG EATEAELFLN CDDMSVLERQ RVQLNYHQYH HPGFEPTLPC FFPNSSKMNV GEVDSFLPSA GLDLPEIYGE LHGDARISVS PGNITTEFGN
101: SKKRKFGCVD TETKVCNEKK KMMMMMDREV AVEEEEEEEK SKVTEQSTRS IMKTKNKAKK EQNSCSNDSS KVTKDSQRTD YIHVRARRGQ ATDSHSIAER
201: ARREKISGRM KFLQDLVPGC EKITGKAGML DEIINYVQSL QRQVEFLSMK LATVSPRLDF NIDDIFSKEV VSAPMMNLPN TVMPPHMMVN SGYPHDMVNS
301: GYVHFNPMQQ VVTSSDPLSC FNNGQSATMW DSDVQNLYTV
101: SKKRKFGCVD TETKVCNEKK KMMMMMDREV AVEEEEEEEK SKVTEQSTRS IMKTKNKAKK EQNSCSNDSS KVTKDSQRTD YIHVRARRGQ ATDSHSIAER
201: ARREKISGRM KFLQDLVPGC EKITGKAGML DEIINYVQSL QRQVEFLSMK LATVSPRLDF NIDDIFSKEV VSAPMMNLPN TVMPPHMMVN SGYPHDMVNS
301: GYVHFNPMQQ VVTSSDPLSC FNNGQSATMW DSDVQNLYTV
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.