Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014603.1-P | Field mustard | nucleus | 91.3 | 36.42 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 39.86 | 35.71 |
| CDX88966 | Canola | nucleus | 81.88 | 34.04 |
| CDX71994 | Canola | nucleus | 84.78 | 32.41 |
| CDY06074 | Canola | nucleus | 82.61 | 32.02 |
| CDX67710 | Canola | nucleus | 71.74 | 30.75 |
| CDY72360 | Canola | cytosol | 30.43 | 28.0 |
| AT3G57800.1 | Thale cress | nucleus | 84.06 | 27.23 |
| CDY53497 | Canola | nucleus | 60.87 | 27.18 |
| CDX79883 | Canola | nucleus | 55.8 | 25.5 |
| HORVU7Hr1G094690.1 | Barley | plastid | 39.86 | 22.27 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 55.07 | 20.88 |
| KRH71879 | Soybean | nucleus | 52.17 | 20.34 |
| KRH33022 | Soybean | nucleus | 50.72 | 19.61 |
| CDX98249 | Canola | nucleus | 38.41 | 18.93 |
| PGSC0003DMT400021130 | Potato | nucleus | 48.55 | 18.61 |
| KRG95332 | Soybean | nucleus | 49.28 | 18.58 |
| CDY61420 | Canola | extracellular | 18.12 | 18.38 |
| Solyc10g079070.1.1 | Tomato | nucleus | 47.83 | 18.28 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 40.58 | 17.83 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 40.58 | 17.72 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 42.75 | 16.16 |
| KRH67006 | Soybean | nucleus | 45.65 | 15.75 |
| Zm00001d046759_P001 | Maize | plastid | 40.58 | 15.73 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 43.48 | 15.5 |
| Zm00001d036807_P001 | Maize | nucleus | 41.3 | 15.41 |
| CDY61581 | Canola | plastid | 20.29 | 15.3 |
| CDY05670 | Canola | nucleus | 28.26 | 15.12 |
| CDY33821 | Canola | mitochondrion, plastid | 20.29 | 14.29 |
| CDY25986 | Canola | plastid | 22.46 | 14.22 |
| CDX86296 | Canola | nucleus | 27.54 | 14.02 |
| OQU76702 | Sorghum | nucleus | 41.3 | 13.9 |
| CDX75440 | Canola | nucleus | 32.61 | 13.68 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 28.26 | 13.45 |
| CDY08308 | Canola | nucleus | 28.26 | 13.36 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 34.78 | 13.11 |
| CDX69067 | Canola | nucleus | 31.88 | 12.94 |
| CDX77488 | Canola | nucleus | 30.43 | 12.77 |
| CDY64034 | Canola | nucleus | 28.26 | 12.7 |
| CDY56230 | Canola | nucleus | 30.43 | 12.61 |
| CDX85122 | Canola | nucleus | 29.71 | 12.39 |
| CDY20659 | Canola | nucleus | 29.71 | 12.31 |
| CDY31048 | Canola | nucleus | 27.54 | 12.1 |
| CDX84885 | Canola | nucleus | 25.36 | 11.78 |
| CDY45806 | Canola | nucleus | 24.64 | 11.6 |
| CDY37979 | Canola | nucleus | 21.74 | 11.28 |
| CDX76288 | Canola | nucleus | 20.29 | 11.2 |
| CDX93427 | Canola | nucleus | 21.74 | 11.19 |
| CDY17466 | Canola | nucleus | 22.46 | 11.15 |
| CDY53834 | Canola | nucleus | 27.54 | 10.95 |
| CDY22605 | Canola | nucleus | 27.54 | 10.76 |
| CDX87255 | Canola | nucleus, plastid | 21.74 | 10.71 |
| CDY28061 | Canola | nucleus | 31.16 | 9.49 |
| CDY45835 | Canola | nucleus | 31.16 | 9.49 |
| CDY51061 | Canola | nucleus | 29.71 | 9.47 |
| CDY35923 | Canola | nucleus, plastid | 30.43 | 9.38 |
| CDY63738 | Canola | nucleus | 23.19 | 9.36 |
| CDX95974 | Canola | nucleus | 31.88 | 9.19 |
| CDY33568 | Canola | nucleus | 31.88 | 9.13 |
| CDX81575 | Canola | nucleus | 31.16 | 9.05 |
| CDY18099 | Canola | nucleus | 13.77 | 8.52 |
| CDY57925 | Canola | nucleus | 23.19 | 8.04 |
| CDX86297 | Canola | nucleus | 27.54 | 7.76 |
| CDX85347 | Canola | nucleus | 27.54 | 7.74 |
| CDY47665 | Canola | cytosol | 8.7 | 4.67 |
| Os09t0474051-01 | Rice | plastid | 15.22 | 3.59 |
Protein Annotations
| EnsemblPlants:CDY47666 | EnsemblPlantsGene:GSBRNA2T00087899001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | ProteinID:CDY47666 | ProteinID:CDY47666.1 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI0004EEFADC | UniProt:A0A078ICS3 | MapMan:15.5.32 | : | : |
Description
BnaC04g24030DBnaC04g24030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICS3]
Coordinates
chrLK032728:+:93034..94919
Molecular Weight (calculated)
15859.8 Da
IEP (calculated)
4.653
GRAVY (calculated)
-0.472
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIFWFLLIQ GTALVLDEII NHVQSLQRQV EMLSMRLASV NPRIDFNLDT ILASENGSLM DGSFNGTTMQ LAWPHQVMET EQSYHHRQLQ QPPPQQWPFD
101: GLNQPVWGRE ENQDHGNDHN SLMVGSASLH PNQVKMEL
101: GLNQPVWGRE ENQDHGNDHN SLMVGSASLH PNQVKMEL
001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
Arabidopsis Description
BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.