Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021130 | Potato | nucleus | 96.12 | 96.39 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 60.66 | 60.16 |
| KRG95332 | Soybean | nucleus | 57.34 | 56.56 |
| KRH71879 | Soybean | nucleus | 52.63 | 53.67 |
| KRH33022 | Soybean | nucleus | 52.63 | 53.22 |
| Bra004679.1-P | Field mustard | nucleus | 42.38 | 50.66 |
| CDX79883 | Canola | nucleus | 42.38 | 50.66 |
| AT2G42300.1 | Thale cress | nucleus | 45.43 | 50.15 |
| CDX98249 | Canola | nucleus | 38.78 | 50.0 |
| CDY53497 | Canola | nucleus | 42.66 | 49.84 |
| KRH67006 | Soybean | nucleus | 55.12 | 49.75 |
| Os06t0613500-01 | Rice | cytosol, nucleus | 24.38 | 49.44 |
| CDX88966 | Canola | nucleus | 45.43 | 49.4 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 18.28 | 47.83 |
| CDY06074 | Canola | nucleus | 47.09 | 47.75 |
| Bra007358.1-P | Field mustard | nucleus | 47.09 | 47.49 |
| Bra014603.1-P | Field mustard | nucleus | 45.43 | 47.4 |
| CDX71994 | Canola | nucleus | 46.81 | 46.81 |
| CDX67710 | Canola | nucleus | 41.0 | 45.96 |
| Bra003300.1-P | Field mustard | nucleus | 41.0 | 45.96 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 39.61 | 45.54 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 39.06 | 44.62 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 35.73 | 44.48 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 44.04 | 43.56 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 46.26 | 43.15 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 42.38 | 41.8 |
| HORVU7Hr1G094690.1 | Barley | plastid | 28.53 | 41.7 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 17.73 | 41.56 |
| CDY47665 | Canola | cytosol | 28.25 | 39.69 |
| Zm00001d046759_P001 | Maize | plastid | 39.06 | 39.61 |
| AT3G57800.1 | Thale cress | nucleus | 46.54 | 39.44 |
| Solyc03g113560.2.1 | Tomato | cytosol | 11.08 | 39.22 |
| Zm00001d036807_P001 | Maize | nucleus | 38.23 | 37.3 |
| OQU76702 | Sorghum | nucleus | 41.0 | 36.1 |
| Solyc04g005130.2.1 | Tomato | nucleus | 21.88 | 34.8 |
| Solyc05g006650.2.1 | Tomato | nucleus | 22.99 | 30.51 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 25.21 | 29.84 |
| Solyc03g034000.2.1 | Tomato | nucleus | 21.88 | 29.7 |
| Solyc06g072520.1.1 | Tomato | nucleus, plastid | 21.05 | 26.3 |
| Solyc09g097870.2.1 | Tomato | nucleus | 31.02 | 25.99 |
| Solyc03g097820.1.1 | Tomato | nucleus | 22.44 | 24.55 |
| Solyc12g098620.1.1 | Tomato | nucleus | 27.15 | 24.26 |
| Solyc01g109700.2.1 | Tomato | nucleus | 27.98 | 23.27 |
| Solyc06g083170.2.1 | Tomato | nucleus | 29.64 | 23.06 |
| Solyc04g077480.2.1 | Tomato | nucleus | 24.38 | 23.04 |
| Solyc09g057710.2.1 | Tomato | nucleus | 29.09 | 22.15 |
| Solyc05g010610.2.1 | Tomato | nucleus | 29.92 | 20.89 |
| Solyc01g010130.2.1 | Tomato | nucleus | 26.87 | 18.06 |
| Solyc04g005220.1.1 | Tomato | nucleus | 18.84 | 16.23 |
Protein Annotations
| EnsemblPlants:Solyc10g079070.1.1 | EnsemblPlantsGene:Solyc10g079070.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000276A582 | UniProt:K4D2E8 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : |
Description
No Description!
Coordinates
chr10:+:60701458..60706201
Molecular Weight (calculated)
39762.6 Da
IEP (calculated)
6.296
GRAVY (calculated)
-0.600
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNLIECIEA GEARSENCGA RMGEIKDGFH QFGEEILSVT SEGGSSFTAL LGLPPNQAVE LLVQSPETDK IASDKLAISE PHYRYPPPPP IFPSDIALID
101: RASKFSVFAA AGNSPESNST LSNSGSKSLF VKQEPLDSEC NHNSSPATSN PLVHQKSTKR KEREKKVKET SKKGKKSAND TSEDGGEKLP YVHVRARRGQ
201: ATDSHSLAER ARREKINARM KLLQELVPGC NKISGTAMVL DEIINHVQSL QRQVEFLSMR LAAVNPRVDF NLESLFAAER SGSHVESNLQ DMVVPPIWAE
301: GQSSGNRNQY QHLWLIEGFH QPAWGRLEDN SSFVTPENSL LTYDSSANSA SLHPNQLKME L
101: RASKFSVFAA AGNSPESNST LSNSGSKSLF VKQEPLDSEC NHNSSPATSN PLVHQKSTKR KEREKKVKET SKKGKKSAND TSEDGGEKLP YVHVRARRGQ
201: ATDSHSLAER ARREKINARM KLLQELVPGC NKISGTAMVL DEIINHVQSL QRQVEFLSMR LAAVNPRVDF NLESLFAAER SGSHVESNLQ DMVVPPIWAE
301: GQSSGNRNQY QHLWLIEGFH QPAWGRLEDN SSFVTPENSL LTYDSSANSA SLHPNQLKME L
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
Arabidopsis Description
BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.