Factsheet for Bra004679.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79883	Canola	nucleus	96.36	96.36
AT2G42300.1	Thale cress	nucleus	75.17	69.42
Bra003300.1-P	Field mustard	nucleus	63.58	59.63
Bra014603.1-P	Field mustard	nucleus	65.23	56.94
Bra007358.1-P	Field mustard	nucleus	67.22	56.7
VIT_08s0007g07870.t01	Wine grape	nucleus	57.28	47.53
KRH71879	Soybean	nucleus	54.97	46.89
KRG95332	Soybean	nucleus	55.96	46.17
KRH33022	Soybean	nucleus	53.64	45.38
PGSC0003DMT400021130	Potato	nucleus	51.66	43.33
Solyc10g079070.1.1	Tomato	nucleus	50.66	42.38
KRH67006	Soybean	nucleus	54.3	41.0
GSMUA_Achr1P19610_001	Banana	nucleus	47.02	38.9
GSMUA_Achr4P19330_001	Banana	nucleus	49.01	38.24
TraesCS7B01G303300.1	Wheat	nucleus	39.07	37.58
TraesCS7D01G397300.1	Wheat	nucleus, plastid	39.07	37.34
TraesCS7A01G403900.1	Wheat	cytosol	18.87	37.01
HORVU7Hr1G094690.1	Barley	plastid	30.13	36.84
GSMUA_Achr7P06330_001	Banana	nucleus	42.72	35.25
GSMUA_Achr9P22300_001	Banana	nucleus	33.11	34.48
Zm00001d046759_P001	Maize	plastid	38.08	32.3
Zm00001d036807_P001	Maize	nucleus	38.41	31.35
Bra034636.1-P	Field mustard	nucleus	28.15	30.25
Bra037059.1-P	Field mustard	nucleus	28.48	30.07
OQU76702	Sorghum	nucleus	39.07	28.78
Bra011540.1-P	Field mustard	nucleus	30.79	28.35
Bra019935.1-P	Field mustard	nucleus	23.84	26.87
Bra022753.1-P	Field mustard	nucleus	25.83	26.26
Bra028335.1-P	Field mustard	nucleus	27.48	25.0
Bra038336.1-P	Field mustard	plastid	29.47	24.38
Bra014972.1-P	Field mustard	nucleus	26.49	24.32
Bra018461.1-P	Field mustard	nucleus	24.83	23.29
Bra019962.1-P	Field mustard	nucleus	25.17	22.42
Bra031700.1-P	Field mustard	nucleus	24.17	22.32
Bra029640.1-P	Field mustard	nucleus, plastid	30.46	20.72
Bra020691.1-P	Field mustard	nucleus	29.8	20.22
Bra004348.1-P	Field mustard	nucleus	31.13	19.75
Bra037478.1-P	Field mustard	nucleus	30.46	18.78
Os09t0474051-01	Rice	plastid	15.56	8.03

Protein Annotations

EnsemblPlants:Bra004679.1	EnsemblPlants:Bra004679.1-P	EnsemblPlantsGene:Bra004679	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF112	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002547897	UniProt:M4CKE4	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

AT2G42300 (E=4e-080) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA05:+:1343872..1346425

Molecular Weight (calculated)

33716.8 Da

IEP (calculated)

6.442

GRAVY (calculated)

-0.573

Length

302 amino acids

Sequence
(BLAST)

001: MFGVSSGAGP YRESPMTGLE SLNFIDEIQQ LAATFPPENT GSFTALLEMP ATQAVELFTS SSQAAGNIAP PTLHPFRRLT FPPDLAAVIA AEQNGNISGE
101: SSSFGIRVKS EPEETDSSQR FVSNQNHNKR KERGKKKVKS SMKKTKISDE EAEKLPYVHV RARRGQATDN HSLAERARRE KINARMKLLQ ELVPGCDKIQ
201: GTALVLDEII NHVQSLQHQV EMLSMRLAAV NPRIDFNLDS LLASQNSFLM DGSFNGEFYH QLQQWPLDGY HQPEWGREED HHEASFLMGS ATLHSNQVKM
301: EL

Best Arabidopsis Sequence Match ( AT2G42300.1 )
(BLAST)

001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL

Arabidopsis Description

BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.