Factsheet for Bra014972.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77488	Canola	nucleus	99.39	99.39
CDX85122	Canola	nucleus	96.05	95.47
Bra028335.1-P	Field mustard	nucleus	82.07	81.33
AT3G23690.1	Thale cress	nucleus	82.67	73.32
Bra037059.1-P	Field mustard	nucleus	56.23	64.69
Bra022753.1-P	Field mustard	nucleus	31.31	34.68
Bra019935.1-P	Field mustard	nucleus	27.96	34.33
Bra034636.1-P	Field mustard	nucleus	26.44	30.96
Solyc09g097870.2.1	Tomato	nucleus	40.43	30.86
PGSC0003DMT400042791	Potato	nucleus	40.43	30.3
Bra031700.1-P	Field mustard	nucleus	30.09	30.28
Bra018461.1-P	Field mustard	nucleus	28.88	29.5
Bra038336.1-P	Field mustard	plastid	31.61	28.49
Bra011540.1-P	Field mustard	nucleus	28.27	28.35
Solyc12g098620.1.1	Tomato	nucleus	34.35	27.97
PGSC0003DMT400011651	Potato	nucleus	34.65	27.6
Bra019962.1-P	Field mustard	nucleus	27.96	27.14
Bra004679.1-P	Field mustard	nucleus	24.32	26.49
Bra003300.1-P	Field mustard	nucleus	25.84	26.4
Bra020691.1-P	Field mustard	nucleus	34.95	25.84
Bra014603.1-P	Field mustard	nucleus	27.05	25.72
Bra037478.1-P	Field mustard	nucleus	37.99	25.51
Bra029640.1-P	Field mustard	nucleus, plastid	34.04	25.23
Bra007358.1-P	Field mustard	nucleus	26.44	24.3
Bra004348.1-P	Field mustard	nucleus	32.22	22.27
VIT_05s0029g00390.t01	Wine grape	nucleus	36.78	22.24

Protein Annotations

EnsemblPlants:Bra014972.1	EnsemblPlants:Bra014972.1-P	EnsemblPlantsGene:Bra014972	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002540DF5	UniProt:M4DEQ0	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

AT3G23690 (E=1e-107) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA07:+:4678007..4679491

Molecular Weight (calculated)

36159.3 Da

IEP (calculated)

5.501

GRAVY (calculated)

-0.708

Length

329 amino acids

Sequence
(BLAST)

001: MENQREESIK YVALGQSDDP FGNEGTIGDL LVGRFCNPQE PISPYPPGIL RFPPYPGQFG SQDSNKSSLL DPDLDRVQTA KPNSRKRKLI PSASASASGG
101: NGKDSPASSS LTASNSKVSG EIVGSKRSKQ DEAGSSNKDD AKPPEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMT LLQDLVPGCN RITGKAVMLD
201: EIINYVQSLQ RQVEFLSMKL ATINPRMEFN PSAALSTEMV QPGEALTQSL YSMACSEQRL PSAYYSLAKN MPRFSDTQFH STDAFVQAET QGFWENDLQS
301: IVQMGFGDVQ QQSNNNSCSE PTLQMKLEP

Best Arabidopsis Sequence Match ( AT3G23690.1 )
(BLAST)

001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P

Arabidopsis Description

BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.