Factsheet for Bra037478.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004740.1-P
Bra037738.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48560.1	Bra004740.1-P	AT2G43060.1	21798944
AT5G48560.1	Bra037738.1-P	AT2G43060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86297	Canola	nucleus	99.39	99.39
CDX85347	Canola	nucleus	97.96	97.76
CDX86296	Canola	nucleus	50.2	90.77
Bra020691.1-P	Field mustard	nucleus	76.33	84.04
AT5G48560.1	Thale cress	nucleus	81.43	80.12
Bra029640.1-P	Field mustard	nucleus, plastid	54.49	60.14
KRG99606	Soybean	nucleus	49.59	41.9
Bra037059.1-P	Field mustard	nucleus	24.08	41.26
KRH46615	Soybean	nucleus	48.16	40.27
KRH07417	Soybean	nucleus, plastid	47.96	39.9
KRH66158	Soybean	nucleus, plastid	47.35	39.06
Bra028335.1-P	Field mustard	nucleus	25.92	38.25
Bra014972.1-P	Field mustard	nucleus	25.51	37.99
Bra019935.1-P	Field mustard	nucleus	20.61	37.69
Bra022753.1-P	Field mustard	nucleus	22.65	37.37
Bra034636.1-P	Field mustard	nucleus	19.59	34.16
Bra038336.1-P	Field mustard	plastid	23.47	31.51
Bra011540.1-P	Field mustard	nucleus	21.02	31.4
Bra003300.1-P	Field mustard	nucleus	20.41	31.06
Bra004679.1-P	Field mustard	nucleus	18.78	30.46
Bra018461.1-P	Field mustard	nucleus	19.8	30.12
Bra031700.1-P	Field mustard	nucleus	20.0	29.97
Bra019962.1-P	Field mustard	nucleus	20.2	29.2
Bra014603.1-P	Field mustard	nucleus	20.61	29.19
Bra007358.1-P	Field mustard	nucleus	21.22	29.05
Bra004348.1-P	Field mustard	nucleus	26.12	26.89

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra037478	EnsemblPlants:Bra037478.1	EnsemblPlants:Bra037478.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4F8R6	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253F92B	InterPro:bHLH_dom	SEG:seg

Description

AT5G48560 (E=1e-163) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA06:+:21261327..21263682

Molecular Weight (calculated)

53368.8 Da

IEP (calculated)

7.068

GRAVY (calculated)

-0.661

Length

490 amino acids

Sequence
(BLAST)

001: MDNELFMNTE LPPPSEMAMH FEQPSSSSAM LNWGLMDPNL ARNSPPQDCF MWEKSTEQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFI IRELIGKLGN
101: IGNTSGDIYG APMNGNVSRS ASCYATPMSS PPPMMNRTAP LTEFSGDPGF AERAAKFSCF GSRSFNGRTN SGIPVNNGKI VNSGKLTRVS STPALKALAS
201: PEFASAARPM IPAGDSPPKL PGEFSRKRKS VSKGKSKDNP LPAASPSPSF SKTAERKEVS EEKGGKRRRE DEGEEEEGNK GGNDTKPPEP PKDYIHVRAR
301: RGQATDSHSL AERVRREKIG ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLSSVNDT RLEFNVDALV SKDAMISSSG SRVHESGLQL
401: ESLSHHNYNN NSQLNTNVSS NNMMLHSPMK SLEPSALARG FTHLPTLTQF TDTISQYQMF SEEDLQSIVG MGVAHNPNHE SQSQNMKIEL

Best Arabidopsis Sequence Match ( AT5G48560.1 )
(BLAST)

001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL

Arabidopsis Description

BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.