Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra003791.1-P | |
| Bra003797.1-P | |
| Bra008154.1-P | |
| Bra009824.1-P | |
| Bra011540.1-P | |
| Bra014972.1-P | nucleus |
| Bra015898.1-P | |
| Bra015906.1-P | |
| Bra018117.1-P | |
| Bra018461.1-P | nucleus |
| Bra020490.1-P | |
| Bra023745.1-P | |
| Bra023746.1-P | |
| Bra025358.1-P | nucleus |
| Bra028335.1-P | nucleus |
| Bra028443.1-P | |
| Bra031700.1-P | nucleus |
| Bra033063.1-P | nucleus |
| Bra034165.1-P | |
| Bra034636.1-P | |
| Bra034866.1-P | |
| Bra036025.1-P | |
| Bra036536.1-P | |
| Bra038336.1-P | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30379 | Canola | cytosol | 39.24 | 100.0 |
| Bra004740.1-P | Field mustard | nucleus | 80.38 | 80.89 |
| AT2G43060.1 | Thale cress | nucleus | 73.42 | 74.36 |
| PGSC0003DMT400014179 | Potato | mitochondrion | 29.11 | 35.94 |
| GSMUA_Achr11P... | Banana | nucleus | 34.18 | 34.18 |
| Solyc12g042010.1.1 | Tomato | mitochondrion | 27.22 | 33.86 |
| KXG27318 | Sorghum | plastid | 39.87 | 30.43 |
| Os04t0660100-01 | Rice | cytosol | 38.61 | 30.2 |
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 37.97 | 29.85 |
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 37.34 | 29.5 |
| TraesCS2A01G499000.1 | Wheat | plastid | 37.34 | 29.35 |
| Zm00001d001982_P001 | Maize | nucleus | 38.61 | 29.33 |
| Zm00001d026510_P001 | Maize | nucleus | 37.34 | 28.37 |
| HORVU2Hr1G111110.2 | Barley | mitochondrion | 36.08 | 27.8 |
Protein Annotations
| EnsemblPlants:Bra037738.1 | EnsemblPlants:Bra037738.1-P | EnsemblPlantsGene:Bra037738 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0043565 | GO:GO:0046983 | PANTHER:PTHR33124 | PANTHER:PTHR33124:SF31 |
| UniParc:UPI0002543AC2 | UniProt:M4F9H5 | MapMan:15.5.32 | : | : | : |
Description
AT2G43060 (E=2e-058) | transcription factor
Coordinates
chrA04:+:17957466..17957942
Molecular Weight (calculated)
18010.9 Da
IEP (calculated)
11.223
GRAVY (calculated)
-0.597
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAYNPIYT DVPEKDVFAL HFLQTLSNLR TQNSFSSPDN KTSDRVKKIK KAAYVSMARA AGATNRLWSR SLLHQAAKRN NKNVRFLRRK RRVTWLMRRR
101: SNRGDPIEDV AAERLRNLVP GGGGMETSKL MEETAHYIKC LSMQVKVMQC LVDGLSPK
101: SNRGDPIEDV AAERLRNLVP GGGGMETSKL MEETAHYIKC LSMQVKVMQC LVDGLSPK
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.